Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5 123 4e-24
seq6050 118 2e-22
>seq5
Length=15909697
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 168920 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 168979
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 168980 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 169039
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 169040 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 169099
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 169100 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 169159
Query 16672 CCG 16674
||
Sbjct 169160 ACG 169162
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 170694 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 170635
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 170634 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 170575
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 170574 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 170515
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 170514 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 170455
Query 16672 CCG 16674
||
Sbjct 170454 ACG 170452
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 199211 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 199152
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 199151 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 199092
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 199091 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 199032
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 199031 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 198972
Query 16672 CCG 16674
||
Sbjct 198971 ACG 198969
>seq6050
Length=251
Score = 118 bits (130), Expect = 2e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 216 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 157
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 156 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 97
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 96 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 37
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
|||||| || || ||||| ||||| |||||||
Sbjct 36 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 4
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068257666949
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |