Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq37 132 6e-26
seq11 105 8e-18
seq313 86.0 8e-12
>seq37
Length=6782005
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | |||||| || || || |||||||| ||||| |||||||||||||
Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468
Query 33446 CAATAAGTCTCTCTCC 33461
||| || |||||| ||
Sbjct 2516469 CAACAACTCTCTCACC 2516484
>seq11
Length=12384036
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||| ||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || || || |||||||||||||||||||| || || ||||| |
Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406
Query 33446 C 33446
|
Sbjct 4522405 C 4522405
Score = 93.3 bits (102), Expect = 5e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 33556 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615
|| ||| |||||| || || || || |||| ||| ||||||||||| ||||| || |||
Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312
Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669
|| ||||| ||||| || || |||||||| | ||| || || | |||||||||
Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | || |||||||| || || || || || || || || || |||
Sbjct 4524067 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 4524008
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||||||||| |||||
Sbjct 4524007 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 4523973
>seq313
Length=537090
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
||||| || |||||||||| || || || |||||||| || || || || ||||| |||
Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
|||||||| || || |||| || || | || || ||| | || ||||| || ||
Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960
Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756
| | | ||| || || || || | || || |||||||| || || || | ||| |
Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900
Query 62757 TTATTAGAGATTTCAGC 62773
| || ||| ||||||
Sbjct 220899 CTGTTGGAGCGTTCAGC 220883
Score = 82.4 bits (90), Expect = 1e-10
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275
|||| ||||| ||||||||||||||||| || || | || || ||||||| | ||
Sbjct 217478 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 217419
Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
|| || || || || ||||| |||||| || || ||| | | || || |||||| ||
Sbjct 217418 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAGG 217360
Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361
|||| ||| ||||| | | |||||||
Sbjct 217359 CTCCAGGTAGATGGCAAAAGCTCCAGG 217333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622888074523880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |