Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq206 125 7e-24 seq313 98.7 9e-16 seq13 96.9 3e-15 >seq206 Length=1612959 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 825229 GCCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 825288 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| ||||| Sbjct 825289 CAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 825348 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 825349 AATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 825408 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 825409 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825457 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 825457 GCCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 825516 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| ||||| Sbjct 825517 CAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 825576 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 825577 AATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 825636 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 825637 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825685 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 825685 GCCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 825744 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| ||||| Sbjct 825745 CAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 825804 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 825805 AATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 825864 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 825865 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825913 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 825913 GCCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 825972 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| ||||| Sbjct 825973 CAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 826032 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 826033 AATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 826092 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 826093 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 826141 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | || | ||| || || || || |||||||| || Sbjct 825000 AGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 825059 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| |||| Sbjct 825060 ACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAG 825119 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 825120 GAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGA 825179 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || ||||| || ||||| ||||||||| Sbjct 825180 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825229 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 826141 GCCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 826200 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| ||| || || ||||||||||| ||| | || || | ||||||||| ||||| Sbjct 826201 CAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 826260 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| | ||| ||| || ||| | | ||| | |||||| ||| ||||| Sbjct 826261 AATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 826320 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 826321 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 826369 >seq313 Length=537090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| ||||||||||| |||| || |||||||| || |||| |||||| | | Sbjct 218696 CACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 218637 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 |||||||| |||||||| ||| ||||||||| Sbjct 218636 TCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 218605 >seq13 Length=12215238 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131055 GTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTG 131114 |||||| ||| || ||||||| ||| || ||||||||||| || |||| | | ||| Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394 Query 131115 CTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATC 131174 |||||| ||||| || || || ||||| ||| || ||||| | ||| | || || Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 3521454 Query 131175 GGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| ||||| || | ||| | ||| || || || || || || || || |||||||| Sbjct 3521455 GCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3521514 Query 131235 G 131235 | Sbjct 3521515 G 3521515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471968000085120