Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq206 154 3e-32
seq13 152 9e-32
>seq206
Length=1612959
Score = 154 bits (170), Expect = 3e-32
Identities = 167/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 825011 AGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825070
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 825071 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825130
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 825131 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 825189
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 825190 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228
Score = 149 bits (164), Expect = 1e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 825239 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825298
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 825299 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825358
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 825359 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 825417
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 825418 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456
Score = 149 bits (164), Expect = 1e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 825467 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825526
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 825527 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825586
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 825587 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 825645
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 825646 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684
Score = 149 bits (164), Expect = 1e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 825695 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825754
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 825755 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825814
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 825815 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 825873
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 825874 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912
Score = 149 bits (164), Expect = 1e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 825923 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825982
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 825983 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 826042
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 826043 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 826101
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || || ||||| ||||| ||||||||
Sbjct 826102 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140
Score = 149 bits (164), Expect = 1e-30
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| || | ||| || ||||| ||||| |||||||| || || || || || | |
Sbjct 826151 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 826210
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || | || || ||||| || ||||||||||||
Sbjct 826211 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 826270
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422
| ||| || ||||| ||||| || ||| ||||| || ||| | || || || | |||
Sbjct 826271 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCGACCTCAAGGGT 826329
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || |||||||| || || ||||||||
Sbjct 826330 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 826368
>seq13
Length=12215238
Score = 152 bits (168), Expect = 9e-32
Identities = 144/181 (80%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 68282 GTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTG 68341
||| || ||||| || || | ||| ||||| | |||||| || || || || || || ||
Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394
Query 68342 TTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
|||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||||
Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 3521454
Query 68402 TGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460
||| | || || |||||||||||||| || ||||| |||||||| || || |||||||
Sbjct 3521455 -GCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 3521513
Query 68461 T 68461
|
Sbjct 3521514 T 3521514
Score = 122 bits (134), Expect = 2e-22
Identities = 124/159 (78%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || ||||| || || || || || || || |||||||| ||
Sbjct 3520982 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCT 3521041
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422
||||| || ||||| |||||||| || |||||||| |||| || || ||||||||
Sbjct 3521042 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC-GCTGGGCTCCACCTCCAAGGT 3521100
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || || || |||||||| || || ||||||||
Sbjct 3521101 GATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCAT 3521139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921534926513960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |