Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq206 113 1e-19
seq13 100 7e-16
>seq206
Length=1612959
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||| || ||||| | || || || || ||||| | || || || |||||
Sbjct 825037 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825096
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| | ||| || | || || ||||| | |||||||| || || ||||| ||
Sbjct 825097 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATT 825156
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | |||||| | || || || || ||||| ||||| || ||||||||||| ||
Sbjct 825157 CTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 825216
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 825217 GAAGATCTGCAT 825228
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| |||||| ||||| || ||||
Sbjct 825226 CATG-CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGT 825284
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||| | || || || ||||| |||| | ||| || |
Sbjct 825285 CAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAG 825344
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| | |||||||| || || ||||| || || || | |||||| | |
Sbjct 825345 GAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCT 825404
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 825405 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| |||||| ||||| || ||||
Sbjct 825454 CATG-CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGT 825512
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||| | || || || ||||| |||| | ||| || |
Sbjct 825513 CAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAG 825572
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| | |||||||| || || ||||| || || || | |||||| | |
Sbjct 825573 GAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCT 825632
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 825633 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| |||||| ||||| || ||||
Sbjct 825682 CATG-CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGT 825740
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||| | || || || ||||| |||| | ||| || |
Sbjct 825741 CAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAG 825800
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| | |||||||| || || ||||| || || || | |||||| | |
Sbjct 825801 GAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCT 825860
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 825861 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || || || | ||| |||||| ||||| || ||||
Sbjct 825910 CATG-CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGT 825968
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || || || ||||| | || || || ||||| |||| | ||| || |
Sbjct 825969 CAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAG 826028
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| || ||||| | |||||||| || || ||||| || || || | |||||| | |
Sbjct 826029 GAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCT 826088
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 826089 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140
>seq13
Length=12215238
Score = 100 bits (110), Expect = 7e-16
Identities = 125/170 (74%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| ||||| | || || || ||||||||||| | ||| || ||| |||
Sbjct 3520973 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---ATCCGGG 3521029
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| |||||||| || || || || ||||| || | ||||| | ||
Sbjct 3521030 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCC 3521089
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| || ||||| ||||| || || ||||||||
Sbjct 3521090 ACCTCCAAGGTGATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCAT 3521139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179539636953054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |