Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq206 125 7e-24 seq13 109 5e-19 >seq206 Length=1612959 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 825017 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825076 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 825077 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825136 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 825137 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825196 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 825197 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 825245 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825304 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 825305 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825364 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 825365 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825424 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 825425 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 825473 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825532 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 825533 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825592 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 825593 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825652 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 825653 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 825701 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825760 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 825761 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825820 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 825821 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825880 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 825881 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 825929 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825988 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 825989 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 826048 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 826049 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 826108 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 826109 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||| ||| | ||| Sbjct 826157 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 826216 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| | || ||||||||| |||||||| ||||| | || Sbjct 826217 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 826276 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || || || || | || | |||| Sbjct 826277 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 826336 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 826337 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 826371 >seq13 Length=12215238 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 64264 GTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTG 64323 |||||| || | | ||||||| ||||||| ||||||||||| ||| | || |||| ||| Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394 Query 64324 CTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 ||||||||||||||| || || || || || || || ||| ||| ||| | || || Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 3521454 Query 64384 ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || || | || | ||||||||| |||| || || || || || ||||| Sbjct 3521455 GCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3521514 Query 64444 TTT 64446 || Sbjct 3521515 GTT 3521517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499597377462920