Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq27 152 7e-32 seq95 132 7e-26 >seq27 Length=8028366 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| || |||||||| ||| |||| || || || || ||||| || Sbjct 6820154 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6820213 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| |||||||||||||||||||| || || |||||||||||||| || Sbjct 6820214 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 6820273 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || || | || | Sbjct 6820274 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 6820333 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || ||||| ||||||||||| || || || | | Sbjct 6820334 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCGATCATC 6820393 Query 9967 TG 9968 || Sbjct 6820394 TG 6820395 Score = 123 bits (136), Expect = 4e-23 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 6818119 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6818178 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 6818179 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGG 6818238 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| | || |||| || ||||||| || || || || || | || | || Sbjct 6818239 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCAATTTCTACCATTG 6818298 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || ||||||||||| || || || ||||| || | || ||| | || || || | Sbjct 6818299 TTTCGCCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 6818358 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || ||||| || || || || ||| Sbjct 6818359 TAGCATCTATGTCTCCATAAAGTTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCT 6818414 >seq95 Length=3687156 Score = 132 bits (146), Expect = 7e-26 Identities = 211/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935 || |||||||| | |||| || | |||||| ||| || | ||| || | || | Sbjct 1591035 ACCCGGAACGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGAT 1590976 Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || | ||||| ||||| ||||||||||||||| | Sbjct 1590975 GCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTACTCT 1590916 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| | | ||||| |||| |||||||||||| || | ||| | Sbjct 1590915 GGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACC 1590856 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || ||||| ||| | ||| | ||||| || | | ||||| | || | Sbjct 1590855 ATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAAC 1590796 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || |||| ||| |||||||| | |||| ||| || || |||||| ||| ||| Sbjct 1590795 TCCAGCGCATCGATGTCTCCATAGAGCTCCTCCAGCTCTGCCGCCTTCTCCTCCTCTCCT 1590736 Query 9176 ACA 9178 || Sbjct 1590735 GCA 1590733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723659309166200