Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq206 136 4e-27 seq13 98.7 1e-15 seq37 89.7 5e-13 seq11 86.0 6e-12 >seq206 Length=1612959 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 825456 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825397 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||| | || || ||||| | ||||| Sbjct 825396 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825337 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825336 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825277 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| | ||||||||| ||||||| ||| Sbjct 825276 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825229 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 825684 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825625 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||| | || || ||||| | ||||| Sbjct 825624 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825565 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825564 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825505 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| | ||||||||| ||||||| ||| Sbjct 825504 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825457 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 825912 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825853 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||| | || || ||||| | ||||| Sbjct 825852 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825793 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825792 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825733 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| | ||||||||| ||||||| ||| Sbjct 825732 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825685 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 826140 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 826081 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||| | || || ||||| | ||||| Sbjct 826080 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 826021 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 826020 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825961 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| | ||||||||| ||||||| ||| Sbjct 825960 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825913 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || |||||| || Sbjct 826371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 826312 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | | | || | || |||| ||| | || || ||||| | ||| Sbjct 826311 AGCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGAC 826252 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | |||| ||| ||||| |||||||| || | ||| ||||| |||||| Sbjct 826251 CAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTAC 826192 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || ||| | || ||||| | ||||||||| ||||||| ||| Sbjct 826191 AACATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 826141 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 825228 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825169 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||| | || || ||||| | ||||| Sbjct 825168 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825109 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825108 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825049 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| | |||||||| |||| || ||| Sbjct 825048 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 825001 >seq13 Length=12215238 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || || ||| ||| | Sbjct 3521139 ATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 3521080 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||||||||| |||||| | || || Sbjct 3521079 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCAG 3521020 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410 ||| |||| || | ||| ||||| |||||||| || | |||||||| Sbjct 3521019 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCT 3520973 >seq37 Length=6782005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| |||||||| ||| |||||||| || ||||| ||||| | || | Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || ||||| |||||| ||||||| ||| ||||| || || || | Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468 Query 133037 CCAC 133040 | || Sbjct 2516469 CAAC 2516472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | |||||||| || |||| ||| | ||||||||| |||| ||||||| Sbjct 2522166 CACCTCCTCCGCCGTCCAAAAGGAGGCCTGGGCCTGTTTGTACATTTTCCATATGTCCGG 2522225 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTT 133492 || || ||||| || || || || ||||||||||||| Sbjct 2522226 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTTT 2522263 >seq11 Length=12384036 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 4519476 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 4519417 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || | || || ||||||||||| || |||| |||||||||| Sbjct 4519416 GTACTGGATGGGGAAGACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 4519362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500125327349120