Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq13 95.1 8e-15
seq206 93.3 3e-14
>seq13
Length=12215238
Score = 95.1 bits (104), Expect = 8e-15
Identities = 133/185 (72%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861
||| ||||| || ||| | || | || |||||||| || || ||||| || || | ||
Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394
Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGAT 34919
|||||| | || | ||||||||||| ||||| ||||| || || || |
Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTG 3521452
Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979
|| | || ||| || || | ||| ||||| || ||||| || ||||||||||||||||||
Sbjct 3521453 TCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGC 3521512
Query 34980 ATATT 34984
|| ||
Sbjct 3521513 ATGTT 3521517
>seq206
Length=1612959
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | || || | ||| | ||| ||||||||| ||||| ||||| ||
Sbjct 825002 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825061
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| |||||||| || || || || || | | |||||||| | ||
Sbjct 825062 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825121
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| || |||| ||| ||||| || || || || || | || | || ||| |
Sbjct 825122 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825179
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| ||||| || || || ||||||||||| |||||||||||
Sbjct 825180 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228
Score = 89.7 bits (98), Expect = 3e-13
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || ||
Sbjct 826177 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 826236
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | |||||||| | || | || |||| ||| ||||| || || |
Sbjct 826237 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 826294
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | ||| ||||| || || || || ||||||
Sbjct 826295 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 826354
Query 34968 ACAAAGATCTGCATATT 34984
|||||||||||||| ||
Sbjct 826355 ACAAAGATCTGCATGTT 826371
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || ||
Sbjct 825265 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825324
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | |||||||| | || | || |||| ||| ||||| || || |
Sbjct 825325 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825382
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | ||| ||||| || || || |||||||||
Sbjct 825383 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825442
Query 34968 ACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 825443 ACGAAGATCTGCAT 825456
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || ||
Sbjct 825493 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825552
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | |||||||| | || | || |||| ||| ||||| || || |
Sbjct 825553 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825610
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | ||| ||||| || || || |||||||||
Sbjct 825611 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825670
Query 34968 ACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 825671 ACGAAGATCTGCAT 825684
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || ||
Sbjct 825721 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825780
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | |||||||| | || | || |||| ||| ||||| || || |
Sbjct 825781 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825838
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | ||| ||||| || || || |||||||||
Sbjct 825839 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825898
Query 34968 ACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 825899 ACGAAGATCTGCAT 825912
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || ||
Sbjct 825949 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 826008
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | |||||||| | || | || |||| ||| ||||| || || |
Sbjct 826009 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 826066
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | ||| ||||| || || || |||||||||
Sbjct 826067 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 826126
Query 34968 ACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 826127 ACGAAGATCTGCAT 826140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324603558508104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |