Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 8e-15 seq206 93.3 3e-14 >seq13 Length=12215238 Score = 95.1 bits (104), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| ||||| || ||| | || | || |||||||| || || ||||| || || | || Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGAT 34919 |||||| | || | ||||||||||| ||||| ||||| || || || | Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTG 3521452 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 || | || ||| || || | ||| ||||| || ||||| || |||||||||||||||||| Sbjct 3521453 TCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGC 3521512 Query 34980 ATATT 34984 || || Sbjct 3521513 ATGTT 3521517 >seq206 Length=1612959 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| ||||||||| ||||| ||||| || Sbjct 825002 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825061 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || | | |||||||| | || Sbjct 825062 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825121 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||| ||| ||||| || || || || || | || | || ||| | Sbjct 825122 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825179 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || ||||||||||| ||||||||||| Sbjct 825180 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 826177 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 826236 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||| ||| ||||| || || | Sbjct 826237 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 826294 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || || |||||| Sbjct 826295 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 826354 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 826355 ACAAAGATCTGCATGTT 826371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 825265 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825324 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||| ||| ||||| || || | Sbjct 825325 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825382 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || ||||||||| Sbjct 825383 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825442 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 825443 ACGAAGATCTGCAT 825456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 825493 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825552 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||| ||| ||||| || || | Sbjct 825553 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825610 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || ||||||||| Sbjct 825611 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825670 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 825671 ACGAAGATCTGCAT 825684 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 825721 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 825780 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||| ||| ||||| || || | Sbjct 825781 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 825838 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || ||||||||| Sbjct 825839 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 825898 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 825899 ACGAAGATCTGCAT 825912 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 825949 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAA 826008 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||| ||| ||||| || || | Sbjct 826009 AATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--A 826066 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || ||||||||| Sbjct 826067 TTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 826126 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 826127 ACGAAGATCTGCAT 826140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324603558508104