Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq206 86.0 4e-11
seq83 86.0 4e-11
>seq206
Length=1612959
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || ||||| || || || |||||| | || || |||| || || |
Sbjct 825239 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825298
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| || ||||| ||||| ||||| | | || || ||||||||||| ||||||
Sbjct 825299 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825358
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
| ||| || ||||| || ||| ||||| ||||| || | ||||||||
Sbjct 825359 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825418
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || |||||||| ||||| || ||
Sbjct 825419 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTG 825453
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || ||||| || || || |||||| | || || |||| || || |
Sbjct 825467 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825526
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| || ||||| ||||| ||||| | | || || ||||||||||| ||||||
Sbjct 825527 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825586
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
| ||| || ||||| || ||| ||||| ||||| || | ||||||||
Sbjct 825587 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825646
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || |||||||| ||||| || ||
Sbjct 825647 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTG 825681
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || ||||| || || || |||||| | || || |||| || || |
Sbjct 825695 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825754
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| || ||||| ||||| ||||| | | || || ||||||||||| ||||||
Sbjct 825755 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825814
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
| ||| || ||||| || ||| ||||| ||||| || | ||||||||
Sbjct 825815 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825874
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || |||||||| ||||| || ||
Sbjct 825875 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTG 825909
Score = 86.0 bits (94), Expect = 4e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || ||||| || || || |||||| | || || |||| || || |
Sbjct 825923 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825982
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|||||| || ||||| ||||| ||||| | | || || ||||||||||| ||||||
Sbjct 825983 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 826042
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
| ||| || ||||| || ||| ||||| ||||| || | ||||||||
Sbjct 826043 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 826102
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || |||||||| ||||| || ||
Sbjct 826103 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTG 826137
>seq83
Length=4108073
Score = 86.0 bits (94), Expect = 4e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| |||||||||||||| || ||||| |||||||| || |||||||| |||||
Sbjct 75129 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGATGCC 75188
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
|| || || || || || ||||| |||||
Sbjct 75189 AACGGCATCCTGAACGTGTCTGCTGTGGATAA 75220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267853499388764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |