Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq171 251 8e-62 seq25 176 5e-39 >seq171 Length=1966995 Score = 251 bits (278), Expect = 8e-62 Identities = 610/916 (67%), Gaps = 7/916 (1%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 ||||| | || ||| |||| ||||| || || || ||| || || || || ||| Sbjct 234447 TGTCGTAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCGACATCAGTATCAAACTTA 234506 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | |||||| ||| | || ||||| | || ||||| ||||||||| Sbjct 234507 TTAGCAAAGAAGTGGTGAT--TTC-GCAGCATCCATTTCAGATCTCCTACCCCGAACACA 234563 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 ||||| || || | || || || |||| || ||||| | || ||||| | ||| || Sbjct 234564 CAGACAGACCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTAGACACATCT 234623 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| |||||||||| || ||||||||||| | || | ||| || || |||||| Sbjct 234624 CCTTCAAAGTACTGCCATTTGACAAACCTGGCCAGTGCATTCATATCAGAAACGTCGTAC 234683 Query 160287 TTGTACATCAGGGGAA-CGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| || || ||| |||||||||| || | || || | ||| | || |||||||| Sbjct 234684 TTGT-CACTAGAAGAAACGGCACCGGGGACTTCAGGGATTCTCTGAATCGTTGCCCACAG 234742 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 || ||| || |||||||| ||||| || | ||| || || || | |||| ||| Sbjct 234743 GTATTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCGATAAATTTGAGGATTTTGCTGCT 234802 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | | || || | |||| | || ||||| || || || || || || || Sbjct 234803 TTCTAATATATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAAAT 234862 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | ||| ||| | |||||| ||| ||||| ||| || | | Sbjct 234863 TGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATACCTGTGTTCTTTACCTTACCATCAAT 234922 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | | | || |||||||| || || | ||||| ||| ||||| | Sbjct 234923 AATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTCTCCAA 234982 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 ||||| |||| | || | ||||| | || || || || |||| ||||| | || Sbjct 234983 GCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGG 235042 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 |||||| | || || | |||||| | ||| ||||| || | || || || || Sbjct 235043 AAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATC 235102 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 ||||||||||||||||||||||||| | |||||| ||||| || || || |||||| Sbjct 235103 TTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCTAA 235162 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA 160825 | |||| | |||||| ||||| ||||| || || ||||| ||| | ||| || || Sbjct 235163 CTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCTTTCACAG-CAGTAAAAA 235221 Query 160826 CATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 || | | ||||| ||| || || | ||| || || |||||||| |||||||| | Sbjct 235222 AGGATTCTGGAGACTTTCTGTCTACATGGATGCAGTAAAGATTCTGAGGAGCGTAGATAG 235281 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 || || | || || | |||||| || || |||| | ||| || ||||| || || | Sbjct 235282 ATCTTAGAAGTCTATCAAGCATCTCGATTTTGTGATAAACCACTATCGAGTAAGCAATTG 235341 Query 160945 GAAACTCGGTCTCCTC 160960 |||| || | ||||| Sbjct 235342 GAAATTCTGCTTCCTC 235357 >seq25 Length=8201792 Score = 176 bits (194), Expect = 5e-39 Identities = 604/932 (65%), Gaps = 36/932 (4%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || || || |||| |||| |||| || | |||||| Sbjct 6011002 CTGTGGCGCAGGTGCTCCTCGAGGCACTGGATGGCGGCATCGTCCACCTGGGGGTCGAAC 6010943 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | | | || |||||| |||||||||| |||| | Sbjct 6010942 TTGTTGGCCAAGAGGTGGTGC---TGCCGGAGCATCCAGGACACGTCTCCGACCCCGTAG 6010886 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || || | |||| |||| |||||||| | ||||| || | Sbjct 6010885 ATGCAGACGGCGCGCTGGTACCGGCCGGTGCAGGGCGGGTAGGGCGCTCCCTTGCTGGTG 6010826 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || ||||||||| || || | | || | || | |||||| ||| ||| Sbjct 6010825 TCGCCCTCCAGGTACTGCCATTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTCG 6010766 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| | |||| | ||| || || ||||| |||| ||| ||||| ||||| Sbjct 6010765 AACTTGTCGTTGTGGGGCATGGCGCCCGGCACGCCAGGCACACGGGTGAGGGTAGCCCAG 6010706 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | ||| |||||||||||||| |||||||| | ||| |||| |||| | | | Sbjct 6010705 ACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCCAGAAACTGCAGCACTGTGGGG 6010646 Query 160404 TCC-CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 ||| || || | ||| ||| ||| | ||||| ||| |||||||||||| | ||| Sbjct 6010645 TCCTCGAAG-ATGTGCTGCACGAAGGCCCGCGTCACCGCAATGTACGCGCTGCCCGTGAA 6010587 Query 160463 TATCGG------TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 || || | ||| ||| || | || || || || || || | Sbjct 6010586 CATGGGCGAGCTGAGCGGTGACGGCAGCTTCTCGGTG----GA--TGTCTTGGA---GAT 6010536 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT---GCGGTGGCATGCG 160573 | | | ||| |||| | | |||||||| | | ||||| || |||| | Sbjct 6010535 GGCATCCCCCACTTCGTGGTGGTACTTCCACCGCAGCTGCTTGTAGGACGATGGCTT--- 6010479 Query 160574 TTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTT 160633 |||| ||| | ||||| || | ||| | || ||| ||||| || Sbjct 6010478 CTCCGACTCCATGCTGTTCTGCCCCTGCAGCATCTGGAGGGCGCGGACCATCTCCGCATT 6010419 Query 160634 CGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCT 160690 || |||| || |||||||| ||||| ||| | ||||| | ||| | | ||| Sbjct 6010418 GGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGTGCCACGGCACGGGGCT 6010359 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 | | |||||||| |||||| || | || ||||||| ||| |||||| || || Sbjct 6010358 C---TGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCGTGACCAGGAGGCATA 6010302 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || |||||||| || ||||||||||||||||| ||| || | |||| || Sbjct 6010301 GACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCGGCGATGGCCCT 6010242 Query 160811 CACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| ||| ||| || || | ||| | ||||| ||| || || || | ||| Sbjct 6010241 CACGGCCTCCTGGAAGGCAGCT--GGGGACTTGCTGTCCATGTGGACACAGTAGACATTC 6010184 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || ||| |||||| | || || | || |||||||||||| || || | ||||| || Sbjct 6010183 TGTGGCACGTAGACAGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACT 6010124 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 || |||||||| || |||||||||| |||||| Sbjct 6010123 ATGGAGTAGGCAATGGGAAACTCGGCCTCCTC 6010092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577164414682680