Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 167 3e-35
seq412 140 4e-27
seq498 100 3e-15
seq11 98.7 1e-14
seq347 96.9 4e-14
seq421 95.1 1e-13
>seq5
Length=15909697
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 139620 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 139679
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 139680 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 139739
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 139740 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 139799
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 139800 GCACCTGCTTCAGCACCTTGTA 139821
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 158052 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 157993
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 157992 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 157933
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 157932 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 157873
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 157872 GCACCTGCTTCAGCACCTTGTA 157851
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 226506 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 226447
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 226446 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 226387
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 226386 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 226327
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 226326 GCACCTGCTTCAGCACCTTGTA 226305
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 234242 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 234183
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 234182 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 234123
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 234122 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 234063
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 234062 GCACCTGCTTCAGCACCTTGTA 234041
Score = 143 bits (158), Expect = 3e-28
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | ||
Sbjct 169573 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 169632
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| | ||||||| || | |
Sbjct 169633 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAGA 169692
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || || ||||||| ||| | || ||||||||| ||| ||||
Sbjct 169693 TGTCGTTGACGAAAGAATTCATGATACTCATGGCTTTAGATGAGATGCCCGTGTCAGGGT 169752
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 169753 GCACCTGCTTCAGCACCTTGTA 169774
Score = 122 bits (134), Expect = 1e-21
Identities = 108/135 (80%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469
||||||||| |||||||||| || |||||| | ||||||| |||| ||||||||
Sbjct 176062 GCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTT 176003
Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529
||| || |||||||||| ||| | |||| ||||||||| |||||||||||||||
Sbjct 176002 GACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTG 175943
Query 1254530 CTTGAGCACCTTGTA 1254544
||| |||||||||||
Sbjct 175942 CTTCAGCACCTTGTA 175928
Score = 87.8 bits (96), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
||||||||||| || |||||||||| ||| | |||| ||||||||| |||||||
Sbjct 251290 ATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGG 251349
Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544
||||||||||| |||||||||||
Sbjct 251350 TGCACCTGCTTCAGCACCTTGTA 251372
>seq412
Length=194236
Score = 140 bits (154), Expect = 4e-27
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || ||| | ||| |||||||| ||||||||||| || | | ||
Sbjct 79986 GCTTGGCCAGCTCACCAGGCAGCAACAGCCGCACGGCAGTCTGGATCTCCCGGGAGGTGA 80045
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | |||||||| || ||||| ||||||| |||| |
Sbjct 80046 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGCGAAGCCTCCCCCGCGATGCGCTCGAAGA 80105
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || || ||||||| | ||| | ||| |||||||||| ||| ||||
Sbjct 80106 TGTCATTGACGAAGGAATTCATGATCCCCATAGCCTTAGAGGAGATGCCCGTGTCTGGGT 80165
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 80166 GCACCTGCTTCAGCACCTTGTA 80187
>seq498
Length=60077
Score = 100 bits (110), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | |||||||| | | |||| |
Sbjct 5562 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACCCCAACCGAGTTC 5503
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || ||||| |||||||| ||| ||||||| ||||||||||||||||||
Sbjct 5502 TTCTTCCACGCCATGGGCGGCCGCGAGGGGCTCATCGACACCGCCGTCAAGACGGCCGAG 5443
Query 509156 ACGGG 509160
|| ||
Sbjct 5442 ACCGG 5438
>seq11
Length=12384036
Score = 98.7 bits (108), Expect = 1e-14
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| || ||||||||||| |||||||||| ||| | | ||
Sbjct 4519476 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 4519417
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| |||||| |||||| || |||| ||| || ||
Sbjct 4519416 GTACTGGATGGGGAAGACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 4519363
>seq347
Length=350341
Score = 96.9 bits (106), Expect = 4e-14
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | || ||||| || ||||| | |||||| || ||
Sbjct 158399 GCTTGGCCAGCTCGCCAGGCAGCAGGAGCCGCACAGCCGTCTGCACCTCGCGGCTGGTGA 158340
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| | ||| | || ||||| || |||||| | | | || |||| |
Sbjct 158339 TGGTGGAGCGGTGGTTGTACTGGGCCAGGCGTGAGGCCTCTGAAGCCAGCCGCTCGAAGA 158280
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| |||||||| |||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 158279 TGTCATTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 158220
Query 1254523 GCACCTGC 1254530
||||||||
Sbjct 158219 GCACCTGC 158212
>seq421
Length=174052
Score = 95.1 bits (104), Expect = 1e-13
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| |||||| ||||||||||| |||| ||| | |||||| ||||||
Sbjct 171469 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 171410
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| | |||||| | ||||| |||||||||||||| ||||||||
Sbjct 171409 CATGACGTCCCGCGGGCACCTCATGGCCATCACGCGCCACGGCGTCAACCGC 171358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106516082861981
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |