Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq206 100 3e-16 seq13 87.8 2e-12 seq313 86.0 6e-12 >seq206 Length=1612959 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 826368 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 826309 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 826308 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 826249 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 826248 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 826189 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 826188 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 826141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 825228 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825169 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 825168 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825109 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 825108 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825049 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 825048 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 825001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 825456 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825397 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 825396 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825337 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 825336 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825277 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 825276 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825229 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 825684 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825625 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 825624 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825565 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 825564 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825505 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 825504 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 825912 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825853 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 825852 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825793 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 825792 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825733 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 825732 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 826140 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 826081 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||| | ||||| || ||||| || || Sbjct 826080 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 826021 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || |||||||| ||| | | | | |||| || || ||| Sbjct 826020 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825961 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| | ||| |||| || | || ||| Sbjct 825960 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825913 >seq13 Length=12215238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || | || || || ||| | Sbjct 3521139 ATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 3521080 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||| || || || || ||||| Sbjct 3521079 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCAG 3521020 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | ||||||| || || || |||||||| ||| Sbjct 3521019 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGAT 3520984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | || || || ||| | Sbjct 3521514 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTCGAGCCCAGC 3521455 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 3521454 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 3521395 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || | |||||||||| || || |||||||| || Sbjct 3521394 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 3521360 >seq313 Length=537090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | ||||| ||| || || ||||| || || || || || |||||| Sbjct 218714 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 218655 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || ||||| |||| || ||||| ||||| || ||||||||||| || Sbjct 218654 CTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 218605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449854899094040