Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 219 7e-51 seq412 183 5e-40 seq347 161 2e-33 seq115 141 1e-27 seq11 105 1e-16 seq498 100 5e-15 seq37 86.0 1e-10 >seq5 Length=15909697 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 158091 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 158032 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 158031 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 157972 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 157971 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 157912 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 157911 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 157852 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 157851 ACACGTAGATCGAGTA 157836 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 139581 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 139640 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 139641 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 139700 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 139701 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 139760 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 139761 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 139820 Query 1485710 AAAC 1485713 | || Sbjct 139821 ACAC 139824 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 226545 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 226486 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 226485 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 226426 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 226425 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 226366 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 226365 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 226306 Query 1485710 AAAC 1485713 | || Sbjct 226305 ACAC 226302 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 234281 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 234222 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 234221 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 234162 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 234161 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 234102 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 234101 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 234042 Query 1485710 AAAC 1485713 | || Sbjct 234041 ACAC 234038 Score = 205 bits (226), Expect = 1e-46 Identities = 199/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 169534 TGTACTTGGTGACCGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 169593 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 169594 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 169653 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| || | ||||||||||| || || |||| Sbjct 169654 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAAAGAATTCA 169713 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 169714 TGATACTCATGGCTTTAGATGAGATGCCCGTGTCAGGGTGCACCTGCTTCAGCACCTTGT 169773 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 169774 ACACGTAGATCGAGTA 169789 Score = 168 bits (186), Expect = 1e-35 Identities = 193/256 (75%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 176158 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 176099 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||| ||| || | | ||| ||| | |||| ||||||||| | Sbjct 176098 G---CAGGAGCAGGGACG-CACCCTCTA-CGGCT-----TCGTCGAGCGCTTGTTGTAGT 176049 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 176048 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 175989 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 175988 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 175929 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 175928 ACACGTAGATCGAGTA 175913 Score = 87.8 bits (96), Expect = 3e-11 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1485628 ATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGG 1485687 ||||||||||| || ||||||||||| ||| | ||| ||||||||| ||||||| Sbjct 251290 ATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGG 251349 Query 1485688 TGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||||||||| ||||||||||| || Sbjct 251350 TGCACCTGCTTCAGCACCTTGTACAC 251375 >seq412 Length=194236 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| || || ||||| |||||| ||||||| || || ||| Sbjct 79947 TGTATTTGGTGACCGCCTTGGTGCCTTCGGAGACAGCGTGCTTGGCCAGCTCACCAGGCA 80006 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| |||| | ||| ||| ||||||||| Sbjct 80007 GCAACAGCCGCACGGCAGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 80066 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||| ||||||| |||| ||||| ||||| || || |||| Sbjct 80067 GCGCCAGGCGCGAAGCCTCCCCCGCGATGCGCTCGAAGATGTCATTGACGAAGGAATTCA 80126 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | || |||||||||| ||| |||||||||||||| |||||||||| Sbjct 80127 TGATCCCCATAGCCTTAGAGGAGATGCCCGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 80186 Query 1485710 AAAC 1485713 | || Sbjct 80187 ACAC 80190 >seq347 Length=350341 Score = 161 bits (178), Expect = 2e-33 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 158438 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 158379 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| | ||||||| || ||| ||| ||| | ||| || | Sbjct 158378 GCAGGAGCCGCACAGCCGTCTGCACCTCGCGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 158320 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | || |||| ||||| |||||||| |||||| Sbjct 158319 TGGGCCAGGCGTGAGGCCTCTGAAGCCAGCCGCTCGAAGATGTCATTGACAAAGGAGTTC 158260 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||||| ||| |||||||||||| Sbjct 158259 ATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGCACCTGC 158212 >seq115 Length=2931561 Score = 141 bits (156), Expect = 1e-27 Identities = 183/247 (74%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||||||||||||||||| ||||||| || || | | Sbjct 1868523 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCCCCCGGGA 1868582 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | |||||||||||| ||||||||||| || | | ||| ||| |||||||| |||| Sbjct 1868583 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1868642 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT- 1485646 |||| | | | ||| || | | |||| || | | ||| || | |||| Sbjct 1868643 GCGCTCAA---AGTTTGCC----TGACAGTTAGGTC-TTCCTCACATTGTCATA-GAGTA 1868693 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||| | ||| ||||||||| ||||||||| |||||||| ||||||| Sbjct 1868694 TCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCT 1868753 Query 1485707 TGTAAAC 1485713 |||| || Sbjct 1868754 TGTAGAC 1868760 >seq11 Length=12384036 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| ||||||||||| |||||||||| ||| || ||| Sbjct 4519475 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 4519416 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || ||||||||||| Sbjct 4519415 TACTGGATGGGGAAGACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 4519363 >seq498 Length=60077 Score = 100 bits (110), Expect = 5e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | |||||||| | | |||| | Sbjct 5562 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACCCCAACCGAGTTC 5503 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| ||||||| |||||||||||||||||| Sbjct 5502 TTCTTCCACGCCATGGGCGGCCGCGAGGGGCTCATCGACACCGCCGTCAAGACGGCCGAG 5443 Query 431142 ACGGG 431146 || || Sbjct 5442 ACCGG 5438 >seq37 Length=6782005 Score = 86.0 bits (94), Expect = 1e-10 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA--TCCGTT 796360 |||||||| || |||||||||||||||| ||||| ||||||||| | ||||| |||| Sbjct 2522167 ACCTCCTCCGCCGTCCAAAAGGAGGCCTGGGCCTGTTTGTACATTTTCCATATGTCCG-- 2522224 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||| |||||||||| | || ||||| |||||| | | || || ||||| Sbjct 2522225 GGTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTTTTTCTGAGAAGAGGCTC 2522279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915438697958327