Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq206 122 6e-23 seq13 118 7e-22 >seq206 Length=1612959 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 826142 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 826201 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 826202 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 826261 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 826262 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 826319 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 826320 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 826369 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 825002 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825061 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 825062 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825121 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 825122 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825179 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || || ||||| || |||||||||||| Sbjct 825180 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825229 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 825230 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825289 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 825290 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825349 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 825350 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825407 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || || ||||| || |||||||||||| Sbjct 825408 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825457 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 825458 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825517 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 825518 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825577 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 825578 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825635 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || || ||||| || |||||||||||| Sbjct 825636 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825685 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 825686 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825745 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 825746 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825805 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 825806 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 825863 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || || ||||| || |||||||||||| Sbjct 825864 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825913 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | |||| || ||||| ||||| ||||| || Sbjct 825914 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825973 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| ||||| ||||| || ||||| |||| | |||||||| | || Sbjct 825974 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 826033 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||| ||| | || || || || || || || | || ||| ||||| Sbjct 826034 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCGCTGGGCTCGA 826091 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| |||||||| || || || ||||| || |||||||||||| Sbjct 826092 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 826141 >seq13 Length=12215238 Score = 118 bits (130), Expect = 7e-22 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 ||| ||||| || ||| ||||| | || ||||| ||||| || || |||||||| | || Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394 Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGAT 34915 |||||| | || | ||||||||||| | || || ||||| || || || | Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTG 3521452 Query 34916 TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 || ||| |||||| || | ||| |||||||| ||||| |||||||| |||||||||||| Sbjct 3521453 TCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGC 3521512 Query 34976 ATG 34978 ||| Sbjct 3521513 ATG 3521515 Score = 96.9 bits (106), Expect = 2e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| ||||| ||||| || ||||||||||| | ||||| || | Sbjct 3520970 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGG 3521029 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||| ||||| | || || ||||| | | || | || ||| ||| Sbjct 3521030 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCC 3521089 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 3521090 ACCTCCAAGGTGATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCATG 3521140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325662660490067