Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq206 149 1e-30
seq314 123 5e-23
seq13 118 2e-21
>seq206
Length=1612959
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 826142 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 826201
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 826202 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 826261
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 826262 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 826321
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| ||||| ||||||||
Sbjct 826322 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 826368
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 825230 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825289
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 825290 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825349
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 825350 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 825409
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 825410 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 825458 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825517
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 825518 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825577
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 825578 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 825637
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 825638 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 825686 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825745
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 825746 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825805
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 825806 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 825865
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 825866 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| |||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 825914 CCACCTCTCAGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825973
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 825974 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 826033
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 826034 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 826093
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 826094 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||||| || | |||||| || ||||||||||| || || || |||||
Sbjct 825002 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 825061
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || ||||| || || | || || || || |||||
Sbjct 825062 AGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGA 825121
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||| || || ||||| || || ||||| ||||| ||||| | || || ||
Sbjct 825122 ATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACC 825181
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 825182 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228
>seq314
Length=515724
Score = 123 bits (136), Expect = 5e-23
Identities = 125/163 (77%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
|| ||||||||||| ||| | || ||||| || |||||||| ||||| || || |||||
Sbjct 377150 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTCTTCATC 377209
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
|| ||||| || ||||| || ||||||| | || || ||||| ||||| || |||||
Sbjct 377210 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 377269
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
||||| | ||| | || ||||| ||| |||| || || ||||
Sbjct 377270 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 377312
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502
|| |||||| | |||| || || || || |||| ||||| || |||||||| || ||
Sbjct 379862 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 379921
Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562
||||||| || ||| || || | ||| || | || || || || ||||||||||||
Sbjct 379922 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 379981
Query 60563 TTCTATTTTAGAACATACAAG 60583
||||| | | | ||||| |||
Sbjct 379982 TTCTACTATCGGACATATAAG 380002
>seq13
Length=12215238
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|||||||| || || || ||||||||||| || || || || || ||||| || || |||
Sbjct 3521357 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCC 3521416
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| || || ||||| || || ||||| || || || || | || || || ||||| ||
Sbjct 3521417 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTG 3521476
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||||||| |||| ||||| ||||| ||||||||
Sbjct 3521477 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3521514
Score = 114 bits (126), Expect = 3e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| || || || ||||| ||||| || || || ||||| || || || || ||
Sbjct 3520982 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCT 3521041
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| || || ||||| || || ||||||||||| || || | || || || ||||| ||
Sbjct 3521042 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTG 3521101
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| ||||||| ||||| ||||| ||||||||
Sbjct 3521102 ATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCAT 3521139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981731682634027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |