Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq53 100 4e-16 seq164 84.2 3e-11 >seq3 Length=19389198 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4124540 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4124481 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 4124480 CCCGACGGGGAG 4124469 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4128382 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4128441 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 4128442 CCCGACGGGGAG 4128453 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4124540 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4124481 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 4124480 CCCGACGGGGAG 4124469 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4128382 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4128441 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 4128442 CCCGACGGGGAG 4128453 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4124469 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4124528 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4124529 TACTAACGAGGA 4124540 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4128453 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4128394 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4128393 TACTAACGAGGA 4128382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 8667 GTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAG 8726 |||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| | Sbjct 4127743 GTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGG 4127802 Query 8727 GAG 8729 ||| Sbjct 4127803 GAG 4127805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 11739 GTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAG 11797 |||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| | Sbjct 4127743 GTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGG 4127802 Query 11798 GAG 11800 ||| Sbjct 4127803 GAG 4127805 >seq53 Length=5534308 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 4137011 TTCCTCGTTAGTATAGTGGTGAGTAGCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 4136952 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 4136951 CCCCGACGGGGAG 4136939 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 4137010 TCCTCGTTAGTATAGTGGTGAGTAGCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4136951 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 4136950 CCCGACGGGGAGG 4136938 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| ||||| || | ||||||| Sbjct 4136939 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGCTACTCACCACTA 4136998 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4136999 TACTAACGAGGA 4137010 >seq164 Length=2085786 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||| ||||| || | ||||| || ||||||| ||||||||| Sbjct 1769353 TATTCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACATGGGAGACTGGGGTTCGA 1769412 Query 8715 TTCCCCGACGAGGA 8728 ||| | || | ||| Sbjct 1769413 TTCTCTGATGGGGA 1769426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652782836867920