Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 3e-17
seq53 100 4e-16
seq164 84.2 3e-11
>seq3
Length=19389198
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4124540 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4124481
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 4124480 CCCGACGGGGAG 4124469
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4128382 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4128441
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 4128442 CCCGACGGGGAG 4128453
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4124540 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4124481
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4124480 CCCGACGGGGAG 4124469
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4128382 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4128441
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4128442 CCCGACGGGGAG 4128453
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4124469 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4124528
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4124529 TACTAACGAGGA 4124540
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4128453 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4128394
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4128393 TACTAACGAGGA 4128382
Score = 87.8 bits (96), Expect = 2e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 8667 GTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAG 8726
|||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| |
Sbjct 4127743 GTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGG 4127802
Query 8727 GAG 8729
|||
Sbjct 4127803 GAG 4127805
Score = 84.2 bits (92), Expect = 3e-11
Identities = 57/63 (90%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 11739 GTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAG 11797
|||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||| |
Sbjct 4127743 GTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGG 4127802
Query 11798 GAG 11800
|||
Sbjct 4127803 GAG 4127805
>seq53
Length=5534308
Score = 100 bits (110), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||
Sbjct 4137011 TTCCTCGTTAGTATAGTGGTGAGTAGCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 4136952
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 4136951 CCCCGACGGGGAG 4136939
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 4137010 TCCTCGTTAGTATAGTGGTGAGTAGCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4136951
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 4136950 CCCGACGGGGAGG 4136938
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| ||||| || | |||||||
Sbjct 4136939 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGCTACTCACCACTA 4136998
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4136999 TACTAACGAGGA 4137010
>seq164
Length=2085786
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|||||||||||||||||||||| ||||| || | ||||| || ||||||| |||||||||
Sbjct 1769353 TATTCCTCGTTAGTATAGTGGTGAGTATCCCTGCCTGTCACATGGGAGACTGGGGTTCGA 1769412
Query 8715 TTCCCCGACGAGGA 8728
||| | || | |||
Sbjct 1769413 TTCTCTGATGGGGA 1769426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652782836867920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |