Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq171 192 7e-44 seq38 127 2e-24 seq25 118 1e-21 >seq171 Length=1966995 Score = 192 bits (212), Expect = 7e-44 Identities = 615/939 (65%), Gaps = 25/939 (3%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 |||||||| | ||| || || | ||| | || || || ||| || ||| ||| Sbjct 234444 TTATGTCGTAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCGACATCAGTATCAAAC 234503 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || || | ||| || | ||| || ||||| || ||||| || |||||| Sbjct 234504 TTATTAGCAAAGAAGTGGTG--ATTTCG-CAGCATCCATTTCAGATCTCCTACCCCGAAC 234560 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || ||||| || || || || |||||||| || || | || || | |||| Sbjct 234561 ACACAGACAGACCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTAGACACA 234620 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||| ||||| || || ||||| | | || | ||| || || |||| Sbjct 234621 TCTCCTTCAAAGTACTGCCATTTGACAAACCTGGCCAGTGCATTCATATCAGAAACGTCG 234680 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||||| |||| || | ||||| || || || | || | |||||| | || ||||| Sbjct 234681 TACTTGT-CACTAGAAGAAACGGCACCGGGGACTTCAGGGATTCTCTGAATCGTTGCCCA 234739 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 ||||| ||| || || || || || || || | |||||| || || | ||| |||| Sbjct 234740 CAGGTATTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCGATAAATT---TGAGGATTTT 234796 Query 162426 ATCG-TATAGAATGTAAGAG--ACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482 | | | ||| || | || | ||| | || | ||| || || |||||||| Sbjct 234797 GCTGCTTTCTAATATATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGA 234856 Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542 ||| | || | | | ||| || | | ||||||| ||| ||||| |||| | || Sbjct 234857 AAAAATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATACCTGTGTTCTTTACCTTACC 234916 Query 162543 CTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TGT 162597 || | | | | | || | || ||||||| | ||| || || || | | Sbjct 234917 ATCAATAATCTCATAGTGTTTTT-TCCACCTTACTTCTTTA----TAAACAGGCATTTTT 234971 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || ||||| | ||||| ||| | ||| |||| | || || || | ||| Sbjct 234972 TCTGTCTCCAAGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTG 235031 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | |||||||| |||| ||||| || || | |||||||| || || | Sbjct 235032 GTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTT 235091 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | ||| ||||| | | || || | ||| ||||| || | ||||| || || || || Sbjct 235092 CTGTAGAGATCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACA 235151 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 || ||||| ||| ||| | ||||||||| || ||||| || ||||| || |||| Sbjct 235152 ACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCTTTCACA 235211 Query 162838 GCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 || ||| | || || | ||||| | ||||| || | |||||| |||||||||| Sbjct 235212 GC-AGTAAAAAAGGATTCTGGAGACTTTC-TGTCTACATGGATGCAGTAAAGATTCTGAG 235269 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||| | || || | ||| || | |||||| || || || | ||||| || | Sbjct 235270 GAGCGTAGATAGATCTTAGAAGTCTATCAAGCATCTCGATTTTGTGATAAACCACTATCG 235329 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || ||||| ||||||| Sbjct 235330 AGTAAGCAATTGGAAATTCTGCTTCCTCATTGCTGAGAG 235368 >seq38 Length=6732988 Score = 127 bits (140), Expect = 2e-24 Identities = 459/703 (65%), Gaps = 15/703 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| ||| || | |||| Sbjct 6566463 GCCAGCTCTCTTGGGGAGAGAAAATCTTCCACGTGTATGAAAGAATCTGATGGAATGTAA 6566404 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 6566403 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 6566344 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || |||||||| || |||| | || || ||||| | || |||||| Sbjct 6566343 TTGTAAAGTTTCTCAGTAATATAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 6566284 Query 177126 TTACAGGAAGATAGTAG-CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 ||||| | ||| | ||| || || |||| | || | || ||||| | | | Sbjct 6566283 TTACAAGTAGAGA-TAGTTGGAATTAAGTTTTTGTCATTGACGTAGTCTCCGAAGGCTTG 6566225 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || |||| ||| || ||||| ||| || || || || | | Sbjct 6566224 CCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCAT 6566166 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || || || ||||| | || || Sbjct 6566165 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC---- 6566111 Query 177303 TTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| ||| ||| | | | | | || | | | | ||||| ||||| |||||||| | Sbjct 6566110 TTC-ATATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTG 6566052 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419 | || || | || || | || || || || |||| ||| || || | ||| || | Sbjct 6566051 AATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG 6565992 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || || || ||||||||||| ||||| || || || | ||| |||| || | Sbjct 6565991 -TATGAGTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGC 6565933 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| || || |||||||| |||| || || || | || | Sbjct 6565932 TGAGGTAAATTAGTCAGATCCCAGCTAATGTCTCTGTGATGAATGAGAACTGCGTGGGAT 6565873 Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599 |||| ||| | || | ||| | || | || ||| || | ||||| || | | Sbjct 6565872 TTGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATTGTTTGG 6565813 Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | |||||||||||| || || | ||||| ||||| Sbjct 6565812 CAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 6565770 >seq25 Length=8201792 Score = 118 bits (130), Expect = 1e-21 Identities = 237/347 (68%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| |||||| || | ||| ||||||||||||||| || | || || Sbjct 6010435 CGGACCATCTCCGCATTGGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAG 6010376 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 | |||| ||| | || | | ||| ||||| | ||||| || || ||||| | ||| Sbjct 6010375 TGCCACGGCACGGGGC-TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCG 6010317 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || || || || ||| |||||| | |||| |||||||| ||| ||| || Sbjct 6010316 TGACCAGGAGGCATAGACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCA 6010257 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | || || |||||||| ||| || | || | || || || | ||| Sbjct 6010256 GGCGGCGATGGCCCTCACGGCCTCCTGGAAGGCAGCTGGG--GACTTGCTGTCCATGTGG 6010199 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 || ||||| | |||||| || |||||| | || ||| | | |||||||||||| || Sbjct 6010198 ACACAGTAGACATTCTGTGGCACGTAGACAGACCGCAGGAGCCGCTCGAACATCTCGATT 6010139 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 6010138 TTGTTGTGGATGACTATGGAGTAGGCAATGGGAAACTCGGCCTCCTC 6010092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578377099572800