Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq171 192 7e-44
seq38 127 2e-24
seq25 118 1e-21
>seq171
Length=1966995
Score = 192 bits (212), Expect = 7e-44
Identities = 615/939 (65%), Gaps = 25/939 (3%)
Strand=Plus/Plus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
|||||||| | ||| || || | ||| | || || || ||| || ||| |||
Sbjct 234444 TTATGTCGTAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCGACATCAGTATCAAAC 234503
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || || || | ||| || | ||| || ||||| || ||||| || ||||||
Sbjct 234504 TTATTAGCAAAGAAGTGGTG--ATTTCG-CAGCATCCATTTCAGATCTCCTACCCCGAAC 234560
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
|| || || ||||| || || || || |||||||| || || | || || | ||||
Sbjct 234561 ACACAGACAGACCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTAGACACA 234620
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| || || |||| ||||| || || ||||| | | || | ||| || || ||||
Sbjct 234621 TCTCCTTCAAAGTACTGCCATTTGACAAACCTGGCCAGTGCATTCATATCAGAAACGTCG 234680
Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||||| |||| || | ||||| || || || | || | |||||| | || |||||
Sbjct 234681 TACTTGT-CACTAGAAGAAACGGCACCGGGGACTTCAGGGATTCTCTGAATCGTTGCCCA 234739
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
||||| ||| || || || || || || || | |||||| || || | ||| ||||
Sbjct 234740 CAGGTATTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCGATAAATT---TGAGGATTTT 234796
Query 162426 ATCG-TATAGAATGTAAGAG--ACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482
| | | ||| || | || | ||| | || | ||| || || ||||||||
Sbjct 234797 GCTGCTTTCTAATATATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGA 234856
Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542
||| | || | | | ||| || | | ||||||| ||| ||||| |||| | ||
Sbjct 234857 AAAAATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATACCTGTGTTCTTTACCTTACC 234916
Query 162543 CTCTACGACCACGT-GTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TGT 162597
|| | | | | | || | || ||||||| | ||| || || || | |
Sbjct 234917 ATCAATAATCTCATAGTGTTTTT-TCCACCTTACTTCTTTA----TAAACAGGCATTTTT 234971
Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657
|| ||||| | ||||| ||| | ||| |||| | || || || | |||
Sbjct 234972 TCTGTCTCCAAGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTG 235031
Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717
||||| | |||||||| |||| ||||| || || | |||||||| || || |
Sbjct 235032 GTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTT 235091
Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777
| ||| ||||| | | || || | ||| ||||| || | ||||| || || || ||
Sbjct 235092 CTGTAGAGATCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACA 235151
Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837
|| ||||| ||| ||| | ||||||||| || ||||| || ||||| || ||||
Sbjct 235152 ACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCTTTCACA 235211
Query 162838 GCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895
|| ||| | || || | ||||| | ||||| || | |||||| ||||||||||
Sbjct 235212 GC-AGTAAAAAAGGATTCTGGAGACTTTC-TGTCTACATGGATGCAGTAAAGATTCTGAG 235269
Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955
| |||||||| | || || | ||| || | |||||| || || || | ||||| || |
Sbjct 235270 GAGCGTAGATAGATCTTAGAAGTCTATCAAGCATCTCGATTTTGTGATAAACCACTATCG 235329
Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
| || || || || || || || ||||| |||||||
Sbjct 235330 AGTAAGCAATTGGAAATTCTGCTTCCTCATTGCTGAGAG 235368
>seq38
Length=6732988
Score = 127 bits (140), Expect = 2e-24
Identities = 459/703 (65%), Gaps = 15/703 (2%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| ||| | ||||| | || | |||||| ||||||| ||| || | ||||
Sbjct 6566463 GCCAGCTCTCTTGGGGAGAGAAAATCTTCCACGTGTATGAAAGAATCTGATGGAATGTAA 6566404
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| || || || ||||| || | || ||||| | ||||| | || |||| |||||
Sbjct 6566403 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 6566344
Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125
||| ||||| || |||||||| || |||| | || || ||||| | || ||||||
Sbjct 6566343 TTGTAAAGTTTCTCAGTAATATAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 6566284
Query 177126 TTACAGGAAGATAGTAG-CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
||||| | ||| | ||| || || |||| | || | || ||||| | | |
Sbjct 6566283 TTACAAGTAGAGA-TAGTTGGAATTAAGTTTTTGTCATTGACGTAGTCTCCGAAGGCTTG 6566225
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || |||| ||| || ||||| ||| || || || || | |
Sbjct 6566224 CCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCAT 6566166
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || ||||| || || || || ||||| | || ||
Sbjct 6566165 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC---- 6566111
Query 177303 TTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| ||| ||| | | | | | || | | | | ||||| ||||| |||||||| |
Sbjct 6566110 TTC-ATATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTG 6566052
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGG 177419
| || || | || || | || || || || |||| ||| || || | ||| || |
Sbjct 6566051 AATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG 6565992
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
| | | | || || || ||||||||||| ||||| || || || | ||| |||| || |
Sbjct 6565991 -TATGAGTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGC 6565933
Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539
||||| | || |||| || || |||||||| |||| || || || | || |
Sbjct 6565932 TGAGGTAAATTAGTCAGATCCCAGCTAATGTCTCTGTGATGAATGAGAACTGCGTGGGAT 6565873
Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599
|||| ||| | || | ||| | || | || ||| || | ||||| || | |
Sbjct 6565872 TTGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATTGTTTGG 6565813
Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642
|| | |||||||||||| || || | ||||| |||||
Sbjct 6565812 CAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 6565770
>seq25
Length=8201792
Score = 118 bits (130), Expect = 1e-21
Identities = 237/347 (68%), Gaps = 6/347 (2%)
Strand=Plus/Minus
Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699
|| |||||||| |||||| || | ||| ||||||||||||||| || | || ||
Sbjct 6010435 CGGACCATCTCCGCATTGGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAG 6010376
Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758
| |||| ||| | || | | ||| ||||| | ||||| || || ||||| | |||
Sbjct 6010375 TGCCACGGCACGGGGC-TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCG 6010317
Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818
||| || || || || ||| |||||| | |||| |||||||| ||| ||| ||
Sbjct 6010316 TGACCAGGAGGCATAGACCACGTTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCA 6010257
Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876
| | || || |||||||| ||| || | || | || || || | |||
Sbjct 6010256 GGCGGCGATGGCCCTCACGGCCTCCTGGAAGGCAGCTGGG--GACTTGCTGTCCATGTGG 6010199
Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936
|| ||||| | |||||| || |||||| | || ||| | | |||||||||||| ||
Sbjct 6010198 ACACAGTAGACATTCTGTGGCACGTAGACAGACCGCAGGAGCCGCTCGAACATCTCGATT 6010139
Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
|| | ||| | || || || || || ||||| ||||| ||||||||
Sbjct 6010138 TTGTTGTGGATGACTATGGAGTAGGCAATGGGAAACTCGGCCTCCTC 6010092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578377099572800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |