Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq93 123 8e-25 seq152 118 3e-23 seq119 114 4e-22 seq57 107 6e-20 seq196 98.7 3e-17 >seq93 Length=3719153 Score = 123 bits (136), Expect = 8e-25 Identities = 73/76 (96%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 673809 TAGGGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 673750 Query 2825 AACCCCGGGCTTCAGC 2840 || ||||||||||||| Sbjct 673749 AATCCCGGGCTTCAGC 673734 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 648395 GCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 648454 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 648455 CCGGGCTTCAGC 648466 >seq152 Length=2293910 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 320833 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 320892 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 320893 CCCGGGCTTCAGC 320905 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 348019 GGCTGAAGCAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 348078 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 348079 CCCGGGCTTCAGC 348091 >seq119 Length=2820483 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 760674 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 760615 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 760614 CCCGGGCTTCAGC 760602 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 886478 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 886537 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 886538 CCCGGGCTTCAGC 886550 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 897518 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 897459 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 897458 CCCGGGCTTCAGC 897446 >seq57 Length=5404254 Score = 107 bits (118), Expect = 6e-20 Identities = 69/74 (93%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAA 2826 |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1116479 GGCTGAAGTAGCTCAGCTGGGAGAGCATTAGATTGAAGATCTTAAAGGTCCCTGGTTCAA 1116538 Query 2827 CCCCGGGCTTCAGC 2840 ||| ||||||||| Sbjct 1116539 GCCCAGGCTTCAGC 1116552 >seq196 Length=1709786 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 385511 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 385570 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 385571 CCGGGTTTCGGC 385582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848283715485