Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq93 123 8e-25
seq152 118 3e-23
seq119 114 4e-22
seq57 107 6e-20
seq196 98.7 3e-17
>seq93
Length=3719153
Score = 123 bits (136), Expect = 8e-25
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 673809 TAGGGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 673750
Query 2825 AACCCCGGGCTTCAGC 2840
|| |||||||||||||
Sbjct 673749 AATCCCGGGCTTCAGC 673734
Score = 122 bits (134), Expect = 3e-24
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 648395 GCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 648454
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 648455 CCGGGCTTCAGC 648466
>seq152
Length=2293910
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 320833 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 320892
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 320893 CCCGGGCTTCAGC 320905
Score = 114 bits (126), Expect = 4e-22
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 348019 GGCTGAAGCAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 348078
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 348079 CCCGGGCTTCAGC 348091
>seq119
Length=2820483
Score = 114 bits (126), Expect = 4e-22
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 760674 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 760615
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 760614 CCCGGGCTTCAGC 760602
Score = 114 bits (126), Expect = 4e-22
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 886478 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 886537
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 886538 CCCGGGCTTCAGC 886550
Score = 114 bits (126), Expect = 4e-22
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 897518 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 897459
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 897458 CCCGGGCTTCAGC 897446
>seq57
Length=5404254
Score = 107 bits (118), Expect = 6e-20
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAA 2826
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1116479 GGCTGAAGTAGCTCAGCTGGGAGAGCATTAGATTGAAGATCTTAAAGGTCCCTGGTTCAA 1116538
Query 2827 CCCCGGGCTTCAGC 2840
||| |||||||||
Sbjct 1116539 GCCCAGGCTTCAGC 1116552
>seq196
Length=1709786
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 385511 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 385570
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 385571 CCGGGTTTCGGC 385582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15848283715485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |