Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 188 1e-41
seq412 149 9e-30
seq347 123 4e-22
seq115 102 1e-15
seq11 98.7 1e-14
seq498 91.5 2e-12
seq37 89.7 7e-12
>seq5
Length=15909697
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 139821 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 139768
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 139767 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 139708
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| ||||||||
Sbjct 139707 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 139648
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 139647 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 139599
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 157851 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 157904
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 157905 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 157964
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| ||||||||
Sbjct 157965 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 158024
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 158025 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 158073
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 226305 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 226358
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 226359 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 226418
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| ||||||||
Sbjct 226419 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 226478
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 226479 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 226527
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 234041 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 234094
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 234095 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 234154
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| ||||||||
Sbjct 234155 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 234214
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 234215 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 234263
Score = 161 bits (178), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||||||||| || || |||| || || |||||
Sbjct 169774 TACAAGGTGCTGAAGCAGGTGCACCCTGACAC-----GGGCATC-TCATCTAAAGCCATG 169721
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||| || || ||||||||||| | || ||||||| | |||||| |||
Sbjct 169720 AGTATCATGAATTCTTTCGTCAACGACATCTTTGAGCGCATCGCCGGCGAGGCGTCGCGC 169661
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| | |||| ||||||||||| ||||||||
Sbjct 169660 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 169601
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| |||||| ||||||| |||||||||||| ||||||||||
Sbjct 169600 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCTGAGGGCACCA 169552
Score = 131 bits (144), Expect = 2e-24
Identities = 168/229 (73%), Gaps = 16/229 (7%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 175928 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 175981
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 175982 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 176041
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| | || ||| | | || ||| |
Sbjct 176042 CTGGCGCACTACAACAAGCGCTCGACG------AAGCCGTAGAGGGTG-CGTCCCTGCTC 176094
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| ||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 176095 CTG---CTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 176140
>seq412
Length=194236
Score = 149 bits (164), Expect = 9e-30
Identities = 171/229 (75%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||||||||| || || |||| ||| ||| | |||
Sbjct 80187 TACAAGGTGCTGAAGCAGGTGCACCCAGACAC-----GGGCATC-TCCTCTAAGGCTATG 80134
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||| || || ||||| ||||| |||| ||||||| ||||| |||
Sbjct 80133 GGGATCATGAATTCCTTCGTCAATGACATCTTCGAGCGCATCGCGGGGGAGGCTTCGCGC 80074
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| | |||||||||| ||| ||| | | || ||||||||||| ||||||||
Sbjct 80073 CTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACTGCCGTGCGG 80014
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| || || ||||||| |||||| |||||||| |||||||
Sbjct 80013 CTGTTGCTGCCTGGTGAGCTGGCCAAGCACGCTGTCTCCGAAGGCACCA 79965
>seq347
Length=350341
Score = 123 bits (136), Expect = 4e-22
Identities = 157/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987
|||||||||||| |||| |||| ||| |||| ||||| |||||||||||
Sbjct 158212 GCAGGTGCACCCTGACACCGG-----CATC-TCCTCCAAGGCCATGAGCATCATGAACTC 158265
Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047
|||||||| ||||| |||| || | | | |||||| |||||||| | | |||
Sbjct 158266 CTTTGTCAATGACATCTTCGAGCGGCTGGCTTCAGAGGCCTCACGCCTGGCCCAGTACAA 158325
Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107
| | ||| ||| ||| || |||||| | ||||| || ||||| || | ||| ||
Sbjct 158326 CCACCGCTCCACCATCACCAGCCGCGAGGTGCAGACGGCTGTGCGGCTCCTGCTGCCTGG 158385
Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| ||||||| |||||||||||||||||||||||
Sbjct 158386 CGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 158420
>seq115
Length=2931561
Score = 102 bits (112), Expect = 1e-15
Identities = 166/232 (72%), Gaps = 14/232 (6%)
Strand=Plus/Minus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| |||||| |||| |||| ||| |||| |||
Sbjct 1868759 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 1868706
Query 724972 TGTCGATCATGA-ACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|| ||||||| |||| | || ||| | | || |||| | | || | | |
Sbjct 1868705 TGGGCATCATGATACTC-TATGACAATGTGAGGAA-GACCTAACTGTCAGGCAAACT--T 1868650
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
| |||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||
Sbjct 1868649 TGA---GCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTG 1868593
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||| | | | || || ||||||| |||||||||||| ||||||||||
Sbjct 1868592 CGCCTGCTGCTCCCGGGGGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 1868541
>seq11
Length=12384036
Score = 98.7 bits (108), Expect = 1e-14
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||||| || ||||| |||||| ||| | |||||||||| |||||
Sbjct 4519363 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 4519422
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||||||||| ||||| ||||| || ||||||||
Sbjct 4519423 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 4519475
>seq498
Length=60077
Score = 91.5 bits (100), Expect = 2e-12
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226
|||| ||||||||||| ||||||| || |||||||||||||| || ||| || || |
Sbjct 5445 CGGCCGTCTTGACGGCGGTGTCGATGAGCCCCTCGCGGCCGCCCATGGCGTGGAAGAAGA 5504
Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284
|||| | | |||||||| | ||| ||||| ||| |||||||||||||||||
Sbjct 5505 ACTCGGTTGGGGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 5562
>seq37
Length=6782005
Score = 89.7 bits (98), Expect = 7e-12
Identities = 89/114 (78%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| || || | | ||||| |||||| ||| | |||||||||| |||| |
Sbjct 2522279 GAGCCTCTTCTCAGAAAAAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCCGGAC 2522220
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|||||| |||||||| ||| ||||| |||||||||||||||| || ||||||||
Sbjct 2522219 ATATGGAAAATGTAC-AAACAGGCCCAGGCCTCCTTTTGGACGGCGGAGGAGGT 2522167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177078841194066
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