Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq60 107 2e-18 seq37 86.0 5e-12 >seq60 Length=5294655 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||||||| | || ||||| || ||| || || ||| ||| Sbjct 699368 TGATGGCTTTGCCACCTTGTCATGCCCTTTGCCAGTTCTATGTTCTAAACGGAGAATTGT 699309 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 699308 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 699249 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 699248 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 699212 >seq37 Length=6782005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || || |||| ||||||||| Sbjct 2519798 CCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTCTCATTGAGAACGTTCACTCGGAAATG 2519739 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||| | || ||||| || ||||||||||| Sbjct 2519738 TACAGCTTGCTTATAGACACTTACATCAAAGA 2519707 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 2511834 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 2511775 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||||| | | || ||| ||||| ||||| || | Sbjct 2511774 AGCGGGTTTCGGAATATCAGCGTTTTGCTGTTATGGCAGAAACAATGGACAACGTTTTCA 2511715 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 2511714 CTCTGGATGCAGATTT 2511699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419219545965