Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq37 98.7 1e-15 seq8 91.5 2e-13 seq406 86.0 7e-12 >seq37 Length=6782005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| ||| || || |||||||||||||||||| |||||||| Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 2516470 Query 74892 ACAA 74895 |||| Sbjct 2516471 ACAA 2516474 >seq8 Length=14342753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 9767963 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTGA 9768022 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| || |||||||| ||||||||||||||| Sbjct 9768023 CCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 9768082 Query 117425 ATCGT 117429 || || Sbjct 9768083 ATAGT 9768087 >seq406 Length=197851 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | || || ||||| ||||| || |||||||| Sbjct 171119 GTGAAGATGTATCGAGGGCTTGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 171060 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | |||||||||||| |||||| || |||||||| || || | | Sbjct 171059 CCAATGGGCTGCAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 171000 Query 152149 ATCGT 152153 || || Sbjct 170999 ATAGT 170995 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| |||||||| || || |||||| || | || || || || Sbjct 171119 GTGAAGATGTATCGAGGGCTTGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 171060 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || | ||| |||||||| |||||||||||| ||||| ||||| | | Sbjct 171059 CCAATGGGCTGCAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 171000 Query 117425 ATCGT 117429 || || Sbjct 170999 ATAGT 170995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547164062361400