Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq37 98.7 1e-15
seq8 91.5 2e-13
seq406 86.0 7e-12
>seq37
Length=6782005
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | || |||||||| || || | |||||||
Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| ||| || || |||||||||||||||||| ||||||||
Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 2516470
Query 74892 ACAA 74895
||||
Sbjct 2516471 ACAA 2516474
>seq8
Length=14342753
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 9767963 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTGA 9768022
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | || || | ||||| || |||||||| |||||||||||||||
Sbjct 9768023 CCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 9768082
Query 117425 ATCGT 117429
|| ||
Sbjct 9768083 ATAGT 9768087
>seq406
Length=197851
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | ||| || | || || ||||| ||||| || ||||||||
Sbjct 171119 GTGAAGATGTATCGAGGGCTTGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 171060
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| || | |||||||||||| |||||| || |||||||| || || | |
Sbjct 171059 CCAATGGGCTGCAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 171000
Query 152149 ATCGT 152153
|| ||
Sbjct 170999 ATAGT 170995
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| |||||||| || || |||||| || | || || || ||
Sbjct 171119 GTGAAGATGTATCGAGGGCTTGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 171060
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| || | ||| |||||||| |||||||||||| ||||| ||||| | |
Sbjct 171059 CCAATGGGCTGCAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 171000
Query 117425 ATCGT 117429
|| ||
Sbjct 170999 ATAGT 170995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547164062361400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |