Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq206 163 7e-35 seq13 127 5e-24 >seq206 Length=1612959 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 826157 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 826216 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 826217 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 826276 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 826277 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 826336 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 826337 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 826371 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 825017 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825076 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 825077 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825136 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 825137 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825196 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 825197 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 825245 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825304 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 825305 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825364 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 825365 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825424 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 825425 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 825473 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825532 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 825533 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825592 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 825593 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825652 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 825653 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 825701 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825760 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 825761 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 825820 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 825821 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 825880 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 825881 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 825929 AGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 825988 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || | | || ||||||||||||| ||||||| |||| Sbjct 825989 TCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTCC 826048 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| || | || ||||| || ||||| ||| Sbjct 826049 TGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGTC 826108 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 826109 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140 >seq13 Length=12215238 Score = 127 bits (140), Expect = 5e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 210935 GTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTG 210994 ||| || || | ||||| | || ||||||||||||||||| || ||||| || | || Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394 Query 210995 TTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||||| ||||||| || ||||||||||||||||| || || || ||||||||||| Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 3521454 Query 211055 AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| | ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 3521455 GCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3521514 Query 211115 TTT 211117 || Sbjct 3521515 GTT 3521517 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | ||||||||||||||||||||| |||||||| || | || || || || ||| Sbjct 3520973 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGGGGA 3521032 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || || |||||||||||||| || || ||||| |||||||| | || ||| Sbjct 3521033 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 3521092 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 3521093 TCCAAGGTGATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCAT 3521139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159039231535445