Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq206 141 2e-28
seq13 122 2e-22
>seq206
Length=1612959
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 825016 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 825075
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 825076 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 825135
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 825136 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 825195
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| || | ||| | |||||
Sbjct 825196 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825228
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 825244 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 825303
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 825304 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 825363
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 825364 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 825423
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| || | ||| | |||||
Sbjct 825424 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825456
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 825472 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 825531
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 825532 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 825591
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 825592 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 825651
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| || | ||| | |||||
Sbjct 825652 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825684
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 825700 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 825759
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 825760 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 825819
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 825820 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 825879
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| || | ||| | |||||
Sbjct 825880 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 825912
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 825928 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 825987
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 825988 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 826047
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 826048 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 826107
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||| ||| || | ||| | |||||
Sbjct 826108 CTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 826140
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| |||||||| || ||||||||||| |||| ||||| || | || || | ||||||
Sbjct 826156 CAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 826215
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| |||||||| || | | || ||||| || ||||| ||||||| |||
Sbjct 826216 TTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTGGTC 826275
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||||| || ||||| || || || || || | ||||| ||
Sbjct 826276 CTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTGATGGT 826335
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 826336 CTTGCCAGTCA 826346
>seq13
Length=12215238
Score = 122 bits (134), Expect = 2e-22
Identities = 121/157 (77%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| |||| || || | ||| ||||| |||||||| ||||| ||||| || | ||
Sbjct 3521336 TTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 3521395
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
|||||||| ||||| || |||||||| |||||||| ||| ||| |||||||||||
Sbjct 3521396 TGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCG 3521455
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691
|| || || || || ||||| |||||||||||||
Sbjct 3521456 CTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCA 3521492
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| |||||||| ||||||||||| || | || || || || ||||| || ||
Sbjct 3520982 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCT 3521041
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| |||||||| ||| ||| ||| |||||||| || ||||| || || |||
Sbjct 3521042 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTG 3521101
Query 225676 ATCGTCTTGCCCGTCA 225691
|| ||||| || ||||
Sbjct 3521102 ATGGTCTTACCTGTCA 3521117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192415184229542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |