Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq37 105 6e-18 >seq11 Length=12384036 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| || || ||||| |||||||| || | ||| |||||||| ||||| || || Sbjct 4522523 TCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4522464 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 4522463 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGCT 4522404 Query 4692 ACTA 4695 |||| Sbjct 4522403 ACTA 4522400 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880 || ||||| || || ||||||||||||||||||||||||||||| || |||||||| || Sbjct 4520353 TATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGCAATCTGGAAG 4520294 Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || | ||||||||| ||||| ||||| Sbjct 4520293 CCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259 >seq37 Length=6782005 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||||||||| || || || |||||||||||||| |||| || Sbjct 2520375 AAAGCTTTCTCACCAGGTTTTCGTTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAA 2520434 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 2520435 CGTGAGAGATAAAGTATTTTTCATCTGCTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTG 2520494 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 2520495 ATAAATCAAC 2520504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | || ||||| || Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| || || || || || ||||| |||||||| || || ||||| || Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 2516470 Query 4692 AC 4693 || Sbjct 2516471 AC 2516472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427010080963469