Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq11 107 3e-18
seq313 96.9 5e-15
seq37 89.7 7e-13
>seq11
Length=12384036
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
||||||| ||| || | ||| |||||||| ||||| || ||||||| ||| | ||| ||
Sbjct 4522523 TCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4522464
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 4522463 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGC 4522405
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| || || ||||| || || || || ||||||
Sbjct 4524067 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 4524008
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944
|||| || || |||||||| |||||||| ||||| |||| || || ||
Sbjct 4524007 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATTCTCTGCTTTGTATAT 4523958
Score = 86.0 bits (94), Expect = 9e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||| ||||| || || || | ||| ||||||||||| || || |||||||| || ||
Sbjct 4520363 ATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGC 4520304
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || || || ||||| | |||||||||| ||||| ||
Sbjct 4520303 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259
>seq313
Length=537090
Score = 96.9 bits (106), Expect = 5e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||| ||||| || | ||||| || ||||| || |||||||| || || || | |||
Sbjct 222599 TGAAACTCTCCTGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 222540
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|| || || ||||| || ||||||||||||||||||||||| || | | | | ||
Sbjct 222539 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAATGAGAAGGCTG 222480
Query 77247 TTTCTGAGACCAT 77259
||||||| |||||
Sbjct 222479 TTTCTGACACCAT 222467
Score = 96.9 bits (106), Expect = 5e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || |||||||||||||| ||||||||| ||| | || || || || || || |
Sbjct 225000 TCCACCCATAGAAATGCATGCTGGTCAGTTTGCCATAGTTGGGTTCTGCGATGTGGATGT 224941
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || ||||| |||||||||||||| || || ||||| || | || || |
Sbjct 224940 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 224881
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| || | || ||||| | || || | | ||| || | ||||| ||||
Sbjct 224880 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 224830
Score = 93.3 bits (102), Expect = 6e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || || || ||||| || || || ||||| |||||||| ||||||| || ||||||
Sbjct 215213 GTGCCCGCGTTGAATAACGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 215154
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| ||||| || || | || ||||| || || ||||| |||| || | |||||||
Sbjct 215153 TAAGTTTCGATTGCGGCATCAATGTCATTTTTGTGGATTCCCACCGACACCCTCATCAAC 215094
Query 78519 ATATGCTGAGG 78529
||||| |||||
Sbjct 215093 ATATGTTGAGG 215083
Score = 91.5 bits (100), Expect = 2e-13
Identities = 128/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
||||||||||| ||||||| || || || |||||||| || |||||||| || || ||
Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTT-GGCAAGTTCACAGCTGGCTTCCAAAGCACCATA 221021
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482
|||||| || || ||||||| || || | || || || ||| ||||| || ||
Sbjct 221020 ATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTA 220961
Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539
| | ||| ||||||||||| | ||||| || ||||| ||||| || | |||
Sbjct 220960 TCTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATG 220904
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061
||||| ||||| ||||||||||| ||||| || |||| || || |||| || | ||
Sbjct 217479 AACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTG 217420
Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
||||| || || || ||||| |||||| || |||||||| | || || |||||| |
Sbjct 217419 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAG 217361
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150
| || || || || || | | |||||||||
Sbjct 217360 GCTCCAGGTAGATGGCAAAAGCTCCAGGTC 217331
>seq37
Length=6782005
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||| || || || || || || ||||| || || | || ||
Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
||||||||||| || ||||| || || || ||||| |||||||| || || ||||| ||
Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 2516470
Query 48285 GTAAGTCTCTCTCC 48298
|| |||||| ||
Sbjct 2516471 ACAACTCTCTCACC 2516484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694602867247520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |