Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 107 3e-18 seq313 96.9 5e-15 seq37 89.7 7e-13 >seq11 Length=12384036 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| ||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 4522523 TCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4522464 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 4522463 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGC 4522405 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || || || || |||||| Sbjct 4524067 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 4524008 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| |||||||| ||||| |||| || || || Sbjct 4524007 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATTCTCTGCTTTGTATAT 4523958 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| ||||| || || || | ||| ||||||||||| || || |||||||| || || Sbjct 4520363 ATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGC 4520304 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | |||||||||| ||||| || Sbjct 4520303 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259 >seq313 Length=537090 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 222599 TGAAACTCTCCTGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 222540 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || ||||| || ||||||||||||||||||||||| || | | | | || Sbjct 222539 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAATGAGAAGGCTG 222480 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 222479 TTTCTGACACCAT 222467 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||||| ||||||||| ||| | || || || || || || | Sbjct 225000 TCCACCCATAGAAATGCATGCTGGTCAGTTTGCCATAGTTGGGTTCTGCGATGTGGATGT 224941 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 224940 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 224881 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 224880 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 224830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || ||||| || || || ||||| |||||||| ||||||| || |||||| Sbjct 215213 GTGCCCGCGTTGAATAACGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 215154 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||| || || | || ||||| || || ||||| |||| || | ||||||| Sbjct 215153 TAAGTTTCGATTGCGGCATCAATGTCATTTTTGTGGATTCCCACCGACACCCTCATCAAC 215094 Query 78519 ATATGCTGAGG 78529 ||||| ||||| Sbjct 215093 ATATGTTGAGG 215083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||||||||| ||||||| || || || |||||||| || |||||||| || || || Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTT-GGCAAGTTCACAGCTGGCTTCCAAAGCACCATA 221021 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 |||||| || || ||||||| || || | || || || ||| ||||| || || Sbjct 221020 ATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTA 220961 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | | ||| ||||||||||| | ||||| || ||||| ||||| || | ||| Sbjct 220960 TCTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATG 220904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| ||||| ||||||||||| ||||| || |||| || || |||| || | || Sbjct 217479 AACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTG 217420 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || || ||||| |||||| || |||||||| | || || |||||| | Sbjct 217419 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAG 217361 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | ||||||||| Sbjct 217360 GCTCCAGGTAGATGGCAAAAGCTCCAGGTC 217331 >seq37 Length=6782005 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || || || || ||||| || || | || || Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || ||||| || || || ||||| |||||||| || || ||||| || Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 2516470 Query 48285 GTAAGTCTCTCTCC 48298 || |||||| || Sbjct 2516471 ACAACTCTCTCACC 2516484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694602867247520