Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq27 149 9e-31
seq95 140 5e-28
>seq27
Length=8028366
Score = 149 bits (164), Expect = 9e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| ||| || ||||| | ||||| ||| ||| |||||||| || ||||||||
Sbjct 6820154 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6820213
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || |||| |||||||| || ||||| || || || |||||||| | || ||
Sbjct 6820214 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 6820273
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| ||||| |||| || ||||||| | ||| || ||| || || | |||||
Sbjct 6820274 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 6820333
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | |||| ||| || || | ||| ||||||||||| || || ||||||
Sbjct 6820334 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCGATCATC 6820393
Query 9484 TG 9485
||
Sbjct 6820394 TG 6820395
Score = 134 bits (148), Expect = 2e-26
Identities = 219/314 (70%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || || ||| | |||| || ||| | | ||
Sbjct 6818119 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6818178
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| | ||| || |||||||| |||||||||||| | ||||
Sbjct 6818179 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGG 6818238
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| ||||| | || |||| || ||||| || ||||| || || || | || | ||
Sbjct 6818239 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCAATTTCTACCATTG 6818298
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || |||||||| || || |||||||| || | || || | ||||||||||
Sbjct 6818299 TTTCGCCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 6818358
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587
||| || | |||||| ||||| | ||||| ||||| || || |||||||||||
Sbjct 6818359 TAGCATCTATGTCTCCATAAAGTTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 6818418
Query 8588 TTATTAATAAAAAA 8601
||||| || || ||
Sbjct 6818419 TTATTGATGAATAA 6818432
>seq95
Length=3687156
Score = 140 bits (154), Expect = 5e-28
Identities = 215/307 (70%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338
|| || || |||||||| | |||| |||| ||| |||||| || || || ||
Sbjct 1591041 TCCGGCACCCGGAACGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTCC 1590982
Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398
| | ||| ||||||| ||| | || || ||||||| ||||| ||||| ||||||
Sbjct 1590981 AGGGATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAG 1590922
Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458
||| | |||||||||||| ||| | | || || || ||||| |||||||| || | |
Sbjct 1590921 TACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATC 1590862
Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518
|| | ||||| || ||||| ||| ||||||| |||| || || | || || || |
Sbjct 1590861 TCCACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGA 1590802
Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578
|| | ||||| || |||| |||||| || || || || || || || ||||||
Sbjct 1590801 TAAAACTCCAGCGCATCGATGTCTCCATAGAGCTCCTCCAGCTCTGCCGCCTTCTCCTCC 1590742
Query 8579 TCTCCTG 8585
|||||||
Sbjct 1590741 TCTCCTG 1590735
Score = 109 bits (120), Expect = 8e-19
Identities = 176/253 (70%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| |||| |||||||| || ||||| || ||||| || ||
Sbjct 1588733 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGGTGC 1588674
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| | ||||| | ||||| || | |||||| || | ||||||| |||||||||||
Sbjct 1588673 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1588614
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||||| || | || || || |||| ||||| | ||||| || | | | |||
Sbjct 1588613 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 1588554
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471
| | || || || | |||||| ||| | | || ||||||||||||| |||| ||
Sbjct 1588553 ATGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGATGACCGAGGGGGGGTACACCTCT 1588494
Query 9472 CCGTCAATCATCT 9484
|| || | || ||
Sbjct 1588493 CCATCCACCACCT 1588481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716808759430720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |