Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq27 149 9e-31 seq95 140 5e-28 >seq27 Length=8028366 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || ||||| | ||||| ||| ||| |||||||| || |||||||| Sbjct 6820154 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6820213 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||| || ||||| || || || |||||||| | || || Sbjct 6820214 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 6820273 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 6820274 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 6820333 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | ||| ||||||||||| || || |||||| Sbjct 6820334 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCGATCATC 6820393 Query 9484 TG 9485 || Sbjct 6820394 TG 6820395 Score = 134 bits (148), Expect = 2e-26 Identities = 219/314 (70%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 6818119 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6818178 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 6818179 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGG 6818238 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| | || |||| || ||||| || ||||| || || || | || | || Sbjct 6818239 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCAATTTCTACCATTG 6818298 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || |||||||| || || |||||||| || | || || | |||||||||| Sbjct 6818299 TTTCGCCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 6818358 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 6818359 TAGCATCTATGTCTCCATAAAGTTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 6818418 Query 8588 TTATTAATAAAAAA 8601 ||||| || || || Sbjct 6818419 TTATTGATGAATAA 6818432 >seq95 Length=3687156 Score = 140 bits (154), Expect = 5e-28 Identities = 215/307 (70%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 || || || |||||||| | |||| |||| ||| |||||| || || || || Sbjct 1591041 TCCGGCACCCGGAACGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTCC 1590982 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | | ||| ||||||| ||| | || || ||||||| ||||| ||||| |||||| Sbjct 1590981 AGGGATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAG 1590922 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| | |||||||||||| ||| | | || || || ||||| |||||||| || | | Sbjct 1590921 TACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATC 1590862 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | ||||| || ||||| ||| ||||||| |||| || || | || || || | Sbjct 1590861 TCCACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGA 1590802 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 || | ||||| || |||| |||||| || || || || || || || |||||| Sbjct 1590801 TAAAACTCCAGCGCATCGATGTCTCCATAGAGCTCCTCCAGCTCTGCCGCCTTCTCCTCC 1590742 Query 8579 TCTCCTG 8585 ||||||| Sbjct 1590741 TCTCCTG 1590735 Score = 109 bits (120), Expect = 8e-19 Identities = 176/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || ||||| || || Sbjct 1588733 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGGTGC 1588674 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 1588673 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1588614 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | || || || |||| ||||| | ||||| || | | | ||| Sbjct 1588613 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 1588554 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | || || || | |||||| ||| | | || ||||||||||||| |||| || Sbjct 1588553 ATGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGATGACCGAGGGGGGGTACACCTCT 1588494 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 1588493 CCATCCACCACCT 1588481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716808759430720