Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq13 127 2e-24
seq206 120 3e-22
>seq13
Length=12215238
Score = 127 bits (140), Expect = 2e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 41683 GTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTG 41742
||| |||||||| ||||||||| |||| || ||||||||||| || || ||||| | |||
Sbjct 3521335 GTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 3521394
Query 41743 TTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTC 41802
||||| | |||| || |||||||||| ||| || ||| | | | |||||
Sbjct 3521395 CTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 3521454
Query 41803 GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| ||||||| || || || || |||||||| ||||| || || ||||||||
Sbjct 3521455 GCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 3521514
Query 41863 GTT 41865
|||
Sbjct 3521515 GTT 3521517
Score = 105 bits (116), Expect = 6e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| | || || ||||||||||| ||||| ||||| | ||| || |||| |
Sbjct 3520970 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGG 3521029
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812
|||| || ||| |||||| ||| || ||| | | |||||||| | ||||
Sbjct 3521030 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCC 3521089
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| || || || ||||| ||||| ||||| || || |||||||||
Sbjct 3521090 ACCTCCAAGGTGATGGTCTTACCTGTCAGGGTCTTCACAAAGATCTGCATG 3521140
>seq206
Length=1612959
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| || ||||| ||| || ||||| ||||| ||||| || ||||| |||
Sbjct 825239 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825298
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | |||| || |||
Sbjct 825299 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825358
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| |||| ||| || ||||| | | || ||||| | ||| ||||| | ||
Sbjct 825359 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825418
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| ||||| |||||||||
Sbjct 825419 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825457
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| || ||||| ||| || ||||| ||||| ||||| || ||||| |||
Sbjct 825467 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825526
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | |||| || |||
Sbjct 825527 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825586
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| |||| ||| || ||||| | | || ||||| | ||| ||||| | ||
Sbjct 825587 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825646
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| ||||| |||||||||
Sbjct 825647 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825685
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| || ||||| ||| || ||||| ||||| ||||| || ||||| |||
Sbjct 825695 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825754
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | |||| || |||
Sbjct 825755 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 825814
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| |||| ||| || ||||| | | || ||||| | ||| ||||| | ||
Sbjct 825815 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 825874
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| ||||| |||||||||
Sbjct 825875 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825913
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| || ||||| ||| || ||||| ||||| ||||| || ||||| |||
Sbjct 825923 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 825982
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | |||| || |||
Sbjct 825983 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 826042
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| |||| ||| || ||||| | | || ||||| | ||| ||||| | ||
Sbjct 826043 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 826102
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || ||||| ||||| ||||| |||||||||
Sbjct 826103 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 826141
Score = 120 bits (132), Expect = 3e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||| || ||||| ||| || ||||| ||||| ||||| || ||||| |||
Sbjct 826151 AGACGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 826210
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | |||| || |||
Sbjct 826211 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCC 826270
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
| |||| ||| || ||||| | | || ||||| | ||| ||||| | ||
Sbjct 826271 TGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACCTCAAGGGTG 826330
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| ||||| || || |||||||||||
Sbjct 826331 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 826371
Score = 116 bits (128), Expect = 3e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | || || | ||| || ||||| ||| || ||||| ||||| |||||
Sbjct 824998 ACAGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 825057
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| ||||| ||| | || || ||||||||||| ||||| |||| | ||| ||||| |
Sbjct 825058 AGACAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCAGG 825117
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
|||| || |||| |||| ||| || ||||| | | || ||||| | |||
Sbjct 825118 AGGAATGCCTTCCTGGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTC 825177
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| | || || || || || ||||| ||||| ||||| |||||||||
Sbjct 825178 GACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 825229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462260121571600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |