Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq32638 96.9 4e-15 >seq32638 Length=16397 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| ||||| |||||||||||||| || | ||| ||||| |||| || Sbjct 13463 ATACCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTT 13522 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | ||||||||| | || || || ||||||||||| || || || || | |||| Sbjct 13523 TCTTCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAA 13582 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 13583 AAGCTACTACACGTTC 13598 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || || ||||||||||| || |||||||| |||||||| ||||| Sbjct 15616 ATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATCTGG 15675 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || ||||| ||||| | ||||| ||||| Sbjct 15676 AAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTC 15713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517091958342960