Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq19977 179 3e-40 seq15741 100 2e-16 >seq19977 Length=118669 Score = 179 bits (198), Expect = 3e-40 Identities = 242/337 (72%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 19001 TCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATAT 19060 |||||| || ||| ||| ||||||||||| ||||| | || ||||| || || ||||| Sbjct 57404 TCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATAT 57463 Query 19061 GGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120 ||| ||||| || || ||||| ||||| | ||| |||| || ||||| || | || || Sbjct 57464 GGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCA 57523 Query 19121 TGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTT 19180 ||| ||||| || || | ||||| || || || ||| | || ||||| || || ||| | Sbjct 57524 TGTCACAGGGCTAAAGCCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCT 57583 Query 19181 GAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCT 19240 ||||||| |||| || ||||||| || || || |||| ||||||||| || Sbjct 57584 GAATCATCTAGAACCTCTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCCCAAACT 57643 Query 19241 TAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGA 19300 | |||| || | || || ||| || | |||||||| || || |||||| |||| Sbjct 57644 CAGAATTCTTTGTAAGGTTGAAGACATCAGTGACTTTAAGGCAGAAGACTTTCAGATTGA 57703 Query 19301 TGGATATAATCCACAccccccccTAAAAATGGAAATG 19337 | | |||||| || || ||| | |||||||| ||| Sbjct 57704 AGATTCTAATCCTCATCCACCCATTAAAATGGAGATG 57740 >seq15741 Length=12914 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 18981 CCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTA 19040 |||||||| || | | || ||||| || ||| ||| ||||||||||| ||||| | Sbjct 7648 CCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTC 7589 Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 || ||||| || || |||||||| ||||| || || ||||| ||||| | ||| |||| Sbjct 7588 TATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTG 7529 Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || ||||| || | || || || ||||| || || Sbjct 7528 CTCACCTATATGATTGCCCACGTCACAGGGCTAAA 7494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399162579137490