Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 179 3e-40
seq15741 100 2e-16
>seq19977
Length=118669
Score = 179 bits (198), Expect = 3e-40
Identities = 242/337 (72%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 19001 TCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATAT 19060
|||||| || ||| ||| ||||||||||| ||||| | || ||||| || || |||||
Sbjct 57404 TCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATAT 57463
Query 19061 GGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCA 19120
||| ||||| || || ||||| ||||| | ||| |||| || ||||| || | || ||
Sbjct 57464 GGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCA 57523
Query 19121 TGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTT 19180
||| ||||| || || | ||||| || || || ||| | || ||||| || || ||| |
Sbjct 57524 TGTCACAGGGCTAAAGCCTGGAGAGTTCATACACACATTTGGAGATGCTCACATATACCT 57583
Query 19181 GAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCT 19240
||||||| |||| || ||||||| || || || |||| ||||||||| ||
Sbjct 57584 GAATCATCTAGAACCTCTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCCCAAACT 57643
Query 19241 TAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGA 19300
| |||| || | || || ||| || | |||||||| || || |||||| ||||
Sbjct 57644 CAGAATTCTTTGTAAGGTTGAAGACATCAGTGACTTTAAGGCAGAAGACTTTCAGATTGA 57703
Query 19301 TGGATATAATCCACAccccccccTAAAAATGGAAATG 19337
| | |||||| || || ||| | |||||||| |||
Sbjct 57704 AGATTCTAATCCTCATCCACCCATTAAAATGGAGATG 57740
>seq15741
Length=12914
Score = 100 bits (110), Expect = 2e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 18981 CCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTA 19040
|||||||| || | | || ||||| || ||| ||| ||||||||||| ||||| |
Sbjct 7648 CCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTATCTTGCCAGCTC 7589
Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100
|| ||||| || || |||||||| ||||| || || ||||| ||||| | ||| ||||
Sbjct 7588 TATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAATATTGCCAGCTATTCACTG 7529
Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135
|| ||||| || | || || || ||||| || ||
Sbjct 7528 CTCACCTATATGATTGCCCACGTCACAGGGCTAAA 7494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399162579137490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |