Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 129 4e-25
seq1195 118 8e-22
seq15741 93.3 3e-14
>seq19977
Length=118669
Score = 129 bits (142), Expect = 4e-25
Identities = 216/310 (70%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 101542 CATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTCATCTGCTT 101600
||| | ||||||||| || || || ||| | | ||| ||| | || ||| ||||| |
Sbjct 57740 CATCTCCATTTTAATGGGTGGATGAGGATTAGAATCTTC-AATCTGAAAGTCTTCTGCCT 57682
Query 101601 TAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGAG 101660
|||||||| ||| | ||| || | | || ||| ||| | ||||| ||||| ||
Sbjct 57681 TAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGAAAAGGTCTTGGCT 57622
Query 101661 TTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTA 101720
|| | | || | ||| |||| || | |||| | || |||||||||||||| |
Sbjct 57621 CTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATGTGAGCATCTCCAA 57562
Query 101721 TAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAA 101780
|| || || |||||||||||| ||| |||||||| |||||||| | || | |
Sbjct 57561 ATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATCATATAGGTGAGCA 57502
Query 101781 GAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840
| |||||||| ||||| || || |||||||| | |||||||| | || || ||||| |
Sbjct 57501 GTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCAGACCTCTGATAGA 57442
Query 101841 GTTGACAGGA 101850
| || || ||
Sbjct 57441 GCTGGCAAGA 57432
>seq1195
Length=14407
Score = 118 bits (130), Expect = 8e-22
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| || | |||||||||| |||||||||| || |||||||||||
Sbjct 3096 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 3037
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| || ||| ||||||| |||| | |||||||||| |||
Sbjct 3036 AATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCTG 2987
>seq15741
Length=12914
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| ||||| ||||| |||||||||||||| || ||||| || ||||| | ||| || |
Sbjct 10739 CTTTGTATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 10798
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| ||||| | ||||| | || | |||||||| ||||||||||
Sbjct 10799 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 10858
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 10859 TCTTCACACCCTTTGCAGAGAGCTCTTTG 10887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360942470434622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |