Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq19977 129 4e-25 seq1195 118 8e-22 seq15741 93.3 3e-14 >seq19977 Length=118669 Score = 129 bits (142), Expect = 4e-25 Identities = 216/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 101542 CATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTCATCTGCTT 101600 ||| | ||||||||| || || || ||| | | ||| ||| | || ||| ||||| | Sbjct 57740 CATCTCCATTTTAATGGGTGGATGAGGATTAGAATCTTC-AATCTGAAAGTCTTCTGCCT 57682 Query 101601 TAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGAG 101660 |||||||| ||| | ||| || | | || ||| ||| | ||||| ||||| || Sbjct 57681 TAAAGTCACTGATGTCTTCAACCTTACAAAGAATTCTGAGTTTGGGAAAAGGTCTTGGCT 57622 Query 101661 TTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTA 101720 || | | || | ||| |||| || | |||| | || |||||||||||||| | Sbjct 57621 CTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGGTATATGTGAGCATCTCCAA 57562 Query 101721 TAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAA 101780 || || || |||||||||||| ||| |||||||| |||||||| | || | | Sbjct 57561 ATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGGGCAATCATATAGGTGAGCA 57502 Query 101781 GAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840 | |||||||| ||||| || || |||||||| | |||||||| | || || ||||| | Sbjct 57501 GTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATATCTCCAGACCTCTGATAGA 57442 Query 101841 GTTGACAGGA 101850 | || || || Sbjct 57441 GCTGGCAAGA 57432 >seq1195 Length=14407 Score = 118 bits (130), Expect = 8e-22 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||||||| || ||||||||||| Sbjct 3096 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 3037 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||| ||||||| |||| | |||||||||| ||| Sbjct 3036 AATGGAGAACCAGGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCTG 2987 >seq15741 Length=12914 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| ||||| |||||||||||||| || ||||| || ||||| | ||| || | Sbjct 10739 CTTTGTATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 10798 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | |||||||| |||||||||| Sbjct 10799 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 10858 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 10859 TCTTCACACCCTTTGCAGAGAGCTCTTTG 10887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360942470434622