Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq32638 129 7e-25 seq22336 111 2e-19 seq7389 96.9 4e-15 seq25550 87.8 2e-12 >seq32638 Length=16397 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | |||||| ||||| ||||| || ||||||| ||| | || | Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||| | Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585 Query 24277 C 24277 | Sbjct 13586 C 13586 >seq22336 Length=52721 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| |||| ||||||| Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 42320 CAACCACTCTCTCACC 42335 >seq7389 Length=11090 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| |||||||||||||||||||| || | || || ||||||| || || Sbjct 3143 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3202 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 3203 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 3261 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 3262 CTCCAGGTAGATGGCAAAAGCCCCAGG 3288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| |||||||| || || ||||| || ||||| ||||||| || |||||| Sbjct 5676 GTGCCAGCATTGAATAAGGTGGGGGAGGCGTGTGTGAACCACCTTTCAGACAGCAGATTG 5735 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||||||||| || | || || || || || || || || | || | ||| ||| Sbjct 5736 TACGTCTCGATCGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 5795 Query 54545 ATGTGCTGAGG 54555 ||||||||||| Sbjct 5796 ATGTGCTGAGG 5806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| ||||| || ||||| || || || || || | Sbjct 9124 CACTGAATACTTTCTTGGTTTCTTTGTGCAGATTGGACACGGCGATCCTCGCTGCCAGGA 9183 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||| || || || |||| || || ||||| || |||| || | ||| || |||| Sbjct 9184 TGGCGTAGTCAGGGTGTTTGGTGGTCAGGGTGGCGGCCGTTTCAGCAGCCAGCGTATCCA 9243 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || ||||| | || | || || || |||||||| Sbjct 9244 GTTCCACTGTCGTGACTCCGCTGTACAGCCCCTGAATCACCTTCAT 9289 >seq25550 Length=27429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||| ||||| |||||||| ||||| || | || || | Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || || |||| |||| | || || |||| Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593201188174560