Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq19977 127 1e-24 seq15741 98.7 7e-16 >seq19977 Length=118669 Score = 127 bits (140), Expect = 1e-24 Identities = 171/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 97007 TTGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 |||||||| || || || || | ||| || || | |||| || | ||||||| Sbjct 57640 TTGGGAAAAGGTCTTGGCTCTCTCTGAAGTTGAACTTTTAGAGGTTCTAGATGATTCAGG 57581 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || |||||||||||||| || ||||| || || |||||||| || | ||||||||| Sbjct 57580 TATATGTGAGCATCTCCAAATGTGTGTATGAACTCTCCAGGCTTTAGCCCTGTGACATGG 57521 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || |||||| | || | || |||||||| ||||| || |||||||| || ||||||||| Sbjct 57520 GCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCAAGTCCCATA 57461 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 || | || || ||||| | ||| || || | | |||| ||||| |||||| Sbjct 57460 TCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAGAACATAGAACTGA 57404 >seq15741 Length=12914 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/148 (75%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| ||||||||||||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 10744 TATTCCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 10803 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 10804 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 10859 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 10860 CTTCACACCCTTTGCAGAGAGCTCTTTG 10887 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||| ||||| |||||| | || | || |||||||| ||||| || |||||||| || Sbjct 7503 GTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCA 7562 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | ||| || || | | |||| ||||| Sbjct 7563 AGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACCATTTAGAACATAG 7622 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 7623 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 7657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346487634275540