Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq22336 102 8e-17
seq32638 98.7 9e-16
>seq22336
Length=52721
Score = 102 bits (112), Expect = 8e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| || ||||| || || | | || |||||| | | ||
Sbjct 37137 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 37196
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
||||||| ||| | ||| ||||||||||| ||||||||||| | |||||||| ||||
Sbjct 37197 GATATTCTGAAACCCGCTTCTCAAAGAAATTGGTTTTTCCTTCCAGAGAAATATTCTCCA 37256
Query 16008 TAAAATCAAAAGGATTTTTTG 16028
| |||||||||||||||| ||
Sbjct 37257 TGAAATCAAAAGGATTTTCTG 37277
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || || || ||||| || || | || ||
Sbjct 42202 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCTTC 42261
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||||||||| ||||| ||||| |||||||| || |||||||||| ||||| |||
Sbjct 42262 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGGCA 42321
Query 16379 ACCAATCGCTCACC 16392
|||| || ||||||
Sbjct 42322 ACCACTCTCTCACC 42335
>seq32638
Length=16397
Score = 98.7 bits (108), Expect = 9e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | ||||| ||||| || || || ||||||| |||| ||| ||
Sbjct 13468 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCTTC 13527
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||||||||| | |||||||| ||||||||||| || ||||| ||||| ||||| ||
Sbjct 13528 AGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAGCT 13587
Query 16379 AC 16380
||
Sbjct 13588 AC 13589
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|| ||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || ||
Sbjct 12163 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 12222
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| || |||||||||||
Sbjct 12223 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 12260
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| |||| ||| || || || || || | ||| |||||||| ||||| || ||
Sbjct 15601 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGTTT 15660
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
||||| || ||||| || ||||| || |||| |||||| | |||||||||||
Sbjct 15661 TCCATGGCAATCTGGAAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTC 15713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462106596669200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |