Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq66667 333 2e-86
seq51960 100 2e-16
>seq66667
Length=814
Score = 333 bits (368), Expect = 2e-86
Identities = 560/806 (69%), Gaps = 6/806 (1%)
Strand=Plus/Minus
Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816
||||| ||||| ||||| || | || ||||| |||||||| ||||| |||||| | |||
Sbjct 807 TTTGAGCGGCTCCTGCGGTCCATCTACGCCCCCCAGAACATTTACTGCGTCCACATTGAT 748
Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876
|||||||||| | ||| | | ||| || |||||| | ||||||||||||||
Sbjct 747 AGCAAGTCCCCAGCTGCCTTCCAGGCGGCCGTGCGGGCCATCGTGGCCTGCTTCCCCAAT 688
Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936
||||| |||| || ||| |||||| ||||||||||||||| | |||| ||
Sbjct 687 GTCTTTGTGGCGAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCC 628
Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996
||||| ||||| ||| | ||| || | |||||| | ||| ||||| || | || ||
Sbjct 627 GACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCGGTGTCATGGCGCTATGTCCTCAAC 568
Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATG 108056
|| || || || || ||||| || |||||||| |||||||| |||| ||||| ||||||
Sbjct 567 ACCTGTGGCACCGATTTCCCTATCAAGACCAACGCCGAGATCGTCCGTGCCCTGAAGATG 508
Query 108057 TTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGG 108116
|| |||| ||||||| |||||||| ||| || || | ||| | ||||||
Sbjct 507 CTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTCAAGCGGGAGCGCTGG 448
Query 108117 AAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGAAGGACCCTCC 108175
| |||| | | || ||| || | ||| |||| | | ||| || ||
Sbjct 447 CAGTACCACCACGAAGTG-GGGAAGTTCATCTCCCGGACAGCCACAGAGAAACTGCCGCC 389
Query 108176 CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGT 108235
|| | || |||||||||||||| || || || | |||| | | || ||||| ||
Sbjct 388 ACCCCACAACGCTCCCATGTTCACAGGCAACGCGTACATCGTGGTCACACGGGCCTTCGT 329
Query 108236 CCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTA 108295
|| || ||||| || ||||| | || | | || |||| ||| ||||||||
Sbjct 328 GCAGCACGTCTTTGAGAACCCCACCGTGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTA 269
Query 108296 TAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTCT 108353
||||| || || || |||||||||| || | || ||| ||| | || ||| |
Sbjct 268 CAGCCCTGAGGAGCATGTCTGGGCCACTCTCAACCGCATGCCTGGTG--TTCCAGGCGCC 211
Query 108354 GTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413
| || | |||||| || | || ||||||| |||| | || | || ||||||
Sbjct 210 ATGCCCCAGAATGACAAGTACCAGCTGTCGGACATGAATGCCCTGCCCCGCCTGGTCAAG 151
Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473
|||||||||| ||||| || ||||| ||| || || || |||||||| | ||
Sbjct 150 TGGCAGTACCTGGAGGGTGACACCAGCAAGGGCGCACCCTACCCACCCTGCACCGGCCGG 91
Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533
|| | | | ||| ||||||| |||||||| || |||||| |||||| |||||| | ||
Sbjct 90 CACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACCTGCCCTGGATGCTCCAGCAGCAC 31
Query 108534 CACCTCTTGGCAAACAAGTTTGACCC 108559
||||||||||| |||||||| |||||
Sbjct 30 CACCTCTTGGCCAACAAGTTCGACCC 5
>seq51960
Length=27294
Score = 100 bits (110), Expect = 2e-16
Identities = 553/870 (64%), Gaps = 21/870 (2%)
Strand=Plus/Plus
Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759
||||| ||| || || ||||| ||||| || ||||| || | || ||||| | ||
Sbjct 10016 GAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATTGAGATGCTT 10075
Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819
|| | || || || | | |||||||||||||| | ||||| | || || ||
Sbjct 10076 GATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATTCATGTTGACAAA 10135
Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879
||||| ||||| |||| | || || |||| || | || || || ||||||
Sbjct 10136 AAGTCTCCAGAATCTTTTTTTGCTGCTGTAAAGGGAATAGTGTCATGTTTTGATAATGTC 10195
Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939
|| || |||| |||| | || || ||||| || ||| ||| ||||| || ||
Sbjct 10196 TTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAACAGGGTGCAGGCAGAT 10255
Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTTACTGAATA 107997
| ||||| ||| |||| | || |||| ||| | | ||||| ||| || | ||
Sbjct 10256 ATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAATACCTAATAAACC 10313
Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057
||||| | ||||| || ||||||||||| || || || | | || |
Sbjct 10314 TCTGCGGCATGGACTTTCCTATAAAGACCAACCAGGAAATAGTAGAGAAATTAAAAGCGC 10373
Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117
| || ||| | ||||| |||| |||| | ||| | ||| || | ||||
Sbjct 10374 TTAAAGGTGAAAACAGCTTGGAAACTGAAAAAATGCCTGTTTATAAAGAAGTAAGGTGGA 10433
Query 108118 AATACCGCTATGAGGTGACAGAC---ACACTGTACCCTACCAGCA-AGATGAAGGACCCT 108173
|| | | | ||||| | | || | | | | || ||| ||| || ||
Sbjct 10434 AAAAACACCATGAGATTATTGATGGTAAAATAAAGAACACAGGCATAGACAAACAACTA- 10492
Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233
|| ||| | | || || || | || | |||||||||||| | || |||
Sbjct 10493 CCACCTCTCAGTACTCCAATTTTTTCTGGTAGTGCCTATTTTGTAGTTAGCAGAAGATTT 10552
Query 108234 GTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292
|| ||||||| ||||| | | | |||| | ||| | |||| |||| ||||||||
Sbjct 10553 GTAGAACATGTGTTAGAAAGCAGCAAAATACTTAAGT-TCATTGAGTGGGCAAAAGACAC 10611
Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG--CCTGGC 108350
|| || || || || |||| ||||| || ||||| | ||| || ||| || ||
Sbjct 10612 TTACAGTCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCCTG-ATGTCCCAGGT 10669
Query 108351 TCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407
| ||| || || || ||||| | | || ||||||| ||| | |||||| |
Sbjct 10670 GCCGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATGAATGCACTGGCCAGGTTT 10726
Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCT 108467
||||||||||||||| || || ||||| || || || || || |||| ||| |
Sbjct 10727 GTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCTCCCTACCCACCATGCAGT 10786
Query 108468 GGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAG 108527
||| | ||| | | |||| ||| |||| || |||||| ||||||| || |
Sbjct 10787 GGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGACCTGAACTGGATGCTACGA 10846
Query 108528 AACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||| ||| |||| || || |||||||||
Sbjct 10847 AACCACCACTTCTTTGCTAATAAGTTTGAC 10876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347971165347828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |