Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq66667 333 2e-86 seq51960 100 2e-16 >seq66667 Length=814 Score = 333 bits (368), Expect = 2e-86 Identities = 560/806 (69%), Gaps = 6/806 (1%) Strand=Plus/Minus Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 ||||| ||||| ||||| || | || ||||| |||||||| ||||| |||||| | ||| Sbjct 807 TTTGAGCGGCTCCTGCGGTCCATCTACGCCCCCCAGAACATTTACTGCGTCCACATTGAT 748 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||||| | ||| | | ||| || |||||| | |||||||||||||| Sbjct 747 AGCAAGTCCCCAGCTGCCTTCCAGGCGGCCGTGCGGGCCATCGTGGCCTGCTTCCCCAAT 688 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 ||||| |||| || ||| |||||| ||||||||||||||| | |||| || Sbjct 687 GTCTTTGTGGCGAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCC 628 Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 ||||| ||||| ||| | ||| || | |||||| | ||| ||||| || | || || Sbjct 627 GACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCGGTGTCATGGCGCTATGTCCTCAAC 568 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATG 108056 || || || || || ||||| || |||||||| |||||||| |||| ||||| |||||| Sbjct 567 ACCTGTGGCACCGATTTCCCTATCAAGACCAACGCCGAGATCGTCCGTGCCCTGAAGATG 508 Query 108057 TTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGG 108116 || |||| ||||||| |||||||| ||| || || | ||| | |||||| Sbjct 507 CTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTCAAGCGGGAGCGCTGG 448 Query 108117 AAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGAAGGACCCTCC 108175 | |||| | | || ||| || | ||| |||| | | ||| || || Sbjct 447 CAGTACCACCACGAAGTG-GGGAAGTTCATCTCCCGGACAGCCACAGAGAAACTGCCGCC 389 Query 108176 CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGT 108235 || | || |||||||||||||| || || || | |||| | | || ||||| || Sbjct 388 ACCCCACAACGCTCCCATGTTCACAGGCAACGCGTACATCGTGGTCACACGGGCCTTCGT 329 Query 108236 CCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTA 108295 || || ||||| || ||||| | || | | || |||| ||| |||||||| Sbjct 328 GCAGCACGTCTTTGAGAACCCCACCGTGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTA 269 Query 108296 TAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTCT 108353 ||||| || || || |||||||||| || | || ||| ||| | || ||| | Sbjct 268 CAGCCCTGAGGAGCATGTCTGGGCCACTCTCAACCGCATGCCTGGTG--TTCCAGGCGCC 211 Query 108354 GTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413 | || | |||||| || | || ||||||| |||| | || | || |||||| Sbjct 210 ATGCCCCAGAATGACAAGTACCAGCTGTCGGACATGAATGCCCTGCCCCGCCTGGTCAAG 151 Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473 |||||||||| ||||| || ||||| ||| || || || |||||||| | || Sbjct 150 TGGCAGTACCTGGAGGGTGACACCAGCAAGGGCGCACCCTACCCACCCTGCACCGGCCGG 91 Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533 || | | | ||| ||||||| |||||||| || |||||| |||||| |||||| | || Sbjct 90 CACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACCTGCCCTGGATGCTCCAGCAGCAC 31 Query 108534 CACCTCTTGGCAAACAAGTTTGACCC 108559 ||||||||||| |||||||| ||||| Sbjct 30 CACCTCTTGGCCAACAAGTTCGACCC 5 >seq51960 Length=27294 Score = 100 bits (110), Expect = 2e-16 Identities = 553/870 (64%), Gaps = 21/870 (2%) Strand=Plus/Plus Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 ||||| ||| || || ||||| ||||| || ||||| || | || ||||| | || Sbjct 10016 GAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATTGAGATGCTT 10075 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || | || || || | | |||||||||||||| | ||||| | || || || Sbjct 10076 GATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATTCATGTTGACAAA 10135 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 ||||| ||||| |||| | || || |||| || | || || || |||||| Sbjct 10136 AAGTCTCCAGAATCTTTTTTTGCTGCTGTAAAGGGAATAGTGTCATGTTTTGATAATGTC 10195 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || || |||| |||| | || || ||||| || ||| ||| ||||| || || Sbjct 10196 TTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAACAGGGTGCAGGCAGAT 10255 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTTACTGAATA 107997 | ||||| ||| |||| | || |||| ||| | | ||||| ||| || | || Sbjct 10256 ATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAATACCTAATAAACC 10313 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 ||||| | ||||| || ||||||||||| || || || | | || | Sbjct 10314 TCTGCGGCATGGACTTTCCTATAAAGACCAACCAGGAAATAGTAGAGAAATTAAAAGCGC 10373 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 | || ||| | ||||| |||| |||| | ||| | ||| || | |||| Sbjct 10374 TTAAAGGTGAAAACAGCTTGGAAACTGAAAAAATGCCTGTTTATAAAGAAGTAAGGTGGA 10433 Query 108118 AATACCGCTATGAGGTGACAGAC---ACACTGTACCCTACCAGCA-AGATGAAGGACCCT 108173 || | | | ||||| | | || | | | | || ||| ||| || || Sbjct 10434 AAAAACACCATGAGATTATTGATGGTAAAATAAAGAACACAGGCATAGACAAACAACTA- 10492 Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233 || ||| | | || || || | || | |||||||||||| | || ||| Sbjct 10493 CCACCTCTCAGTACTCCAATTTTTTCTGGTAGTGCCTATTTTGTAGTTAGCAGAAGATTT 10552 Query 108234 GTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292 || ||||||| ||||| | | | |||| | ||| | |||| |||| |||||||| Sbjct 10553 GTAGAACATGTGTTAGAAAGCAGCAAAATACTTAAGT-TCATTGAGTGGGCAAAAGACAC 10611 Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG--CCTGGC 108350 || || || || || |||| ||||| || ||||| | ||| || ||| || || Sbjct 10612 TTACAGTCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCCTG-ATGTCCCAGGT 10669 Query 108351 TCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 | ||| || || || ||||| | | || ||||||| ||| | |||||| | Sbjct 10670 GCCGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATGAATGCACTGGCCAGGTTT 10726 Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCT 108467 ||||||||||||||| || || ||||| || || || || || |||| ||| | Sbjct 10727 GTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCTCCCTACCCACCATGCAGT 10786 Query 108468 GGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAG 108527 ||| | ||| | | |||| ||| |||| || |||||| ||||||| || | Sbjct 10787 GGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGACCTGAACTGGATGCTACGA 10846 Query 108528 AACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||| |||| || || ||||||||| Sbjct 10847 AACCACCACTTCTTTGCTAATAAGTTTGAC 10876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347971165347828