Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq19977 143 2e-29 seq15741 118 8e-22 >seq19977 Length=118669 Score = 143 bits (158), Expect = 2e-29 Identities = 224/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 20451 TGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAA 20510 |||||| || || || | ||||| | || | ||||||||||| || || |||||||| Sbjct 57425 TGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTTCAA 57484 Query 20511 TATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGG 20570 |||||| || ||| | ||||| || ||||||||||| ||||| |||| |||| | || Sbjct 57485 TATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCATGTCACAGGGCTAAAGCCTGG 57544 Query 20571 TGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAA 20630 || || | ||||| | ||||| || || || ||||| |||||| |||||||| |||| Sbjct 57545 AGAGTTCATACACACATTTGGAGATGCTCACATATACCTGAATCATCTAGAACCTCTAAA 57604 Query 20631 A-TTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTA 20689 | || | || | | || | |||| || || || | || | ||| | | | ||| Sbjct 57605 AGTTCAACTTCAGA-GAGAGCCAAGACCTTTTCCCAAACTCAGAATTCTTTGTAAGGTTG 57663 Query 20690 AAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATT 20749 |||| || | || ||||| || || || ||| | | |||| || |||||| ||| Sbjct 57664 AAGACATCAGTGACTTTAAGGCAGAAGACTTTCAGATTGAAGATTCTAATCCTCATCCAC 57723 Query 20750 CAATTCCAATGGAAATGT 20767 | ||| |||||| |||| Sbjct 57724 CCATTAAAATGGAGATGT 57741 >seq15741 Length=12914 Score = 118 bits (130), Expect = 8e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||||||||||||||| ||| || ||||| || || ||| || Sbjct 7670 AGATATTTCTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAA 7611 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | |||||| || || || | ||||| | || | ||||||||||| || || ||||| Sbjct 7610 TGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTTT 7551 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||||||||| || ||| | ||||| || ||||||||||| || || |||| Sbjct 7550 CAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCACGTCACAG 7501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398842852613290