Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq32638 123 2e-23 >seq32638 Length=16397 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || |||||||| ||||| || | || ||||| || |||| ||| | Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||||| || ||||| || |||||||| ||||| || ||||| ||||| | Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585 Query 14346 CTATTAATCGTTCTCC 14361 ||| || |||||||| Sbjct 13586 CTACTACACGTTCTCC 13601 Score = 105 bits (116), Expect = 6e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||||| | | |||||| || |||||||| | || ||||||||||| ||||||| Sbjct 15599 TCTCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGT 15658 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 ||||||| || ||||| || ||||| ||||||| |||||||| |||||| ||| Sbjct 15659 TTTCCATGGCAATCTGGAAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTCT 15714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481922812022960