Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq32638 129 8e-25
seq51104 120 4e-22
seq22336 114 2e-20
seq7389 96.9 5e-15
seq25550 87.8 2e-12
>seq32638
Length=16397
Score = 129 bits (142), Expect = 8e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | |||||| ||||| ||||| || ||||||| ||| | || |
Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585
Query 36300 C 36300
|
Sbjct 13586 C 13586
>seq51104
Length=8624
Score = 120 bits (132), Expect = 4e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || |||||| | | | ||| || ||||||||||||||||| |||
Sbjct 988 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1047
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| | || | | || |||||||| || | || || || || |
Sbjct 1048 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 1107
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
|| |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| |
Sbjct 1108 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 1167
Query 9408 TCCACTGTTTCACT 9421
|||| ||| |||||
Sbjct 1168 TCCATTGTCTCACT 1181
Score = 120 bits (132), Expect = 4e-22
Identities = 115/147 (78%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 9450 AAAATTAAAA---TCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTC 9506
|||||||||| || ||| | |||| | |||||||||| ||| ||||| ||||||
Sbjct 2297 AAAATTAAAAAAATCATCAATATGACAACGTACCCTGCTCCAAATTTGCTGAAGTCTCTC 2356
Query 9507 TTTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCT 9566
|| || || | |||||||||||||| ||||||| || |||||||| || || || |||
Sbjct 2357 TTCGACTGCAAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCT 2416
Query 9567 TGCATAACGACATGCACATCATAGAAA 9593
|||| |||||| |||||||||||||
Sbjct 2417 TGCAAGACGACAAACACATCATAGAAA 2443
>seq22336
Length=52721
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| |||| |||||||
Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 42320 CAACCACTCTCTCACC 42335
>seq7389
Length=11090
Score = 96.9 bits (106), Expect = 5e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
||||| ||||| |||||||||||||||||||| || | || | ||||||| || ||
Sbjct 3143 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3202
Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
|| || || || || ||||| |||||| || || ||| | | || || ||||||||||
Sbjct 3203 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 3261
Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205
|||| ||| ||||| | | | |||||
Sbjct 3262 CTCCAGGTAGATGGCAAAAGCCCCAGG 3288
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| ||||| || ||||| || || || || | |
Sbjct 9124 CACTGAATACTTTCTTGGTTTCTTTGTGCAGATTGGACACGGCGATCCTCGCTGCCAGGA 9183
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
|||| || || || |||| || || ||||| || |||| || ||||| || ||||
Sbjct 9184 TGGCGTAGTCAGGGTGTTTGGTGGTCAGGGTGGCGGCCGTTTCAGCAGCCAGCGTATCCA 9243
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || ||||| | || | || || || ||||||||
Sbjct 9244 GTTCCACTGTCGTGACTCCGCTGTACAGCCCCTGAATCACCTTCAT 9289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || ||||| |||||||| || || ||||| || ||||| ||||||| || ||||||
Sbjct 5676 GTGCCAGCATTGAATAAGGTGGGGGAGGCGTGTGTGAACCACCTTTCAGACAGCAGATTG 5735
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
|||||||| || || | || || || || || || || || | || | ||| |||
Sbjct 5736 TACGTCTCGATCGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 5795
Query 66576 ATGTGCTGAGG 66586
|||||||||||
Sbjct 5796 ATGTGCTGAGG 5806
>seq25550
Length=27429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
| | ||| || || ||||||||||| ||||| |||||||| ||||| || | || || |
Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | || ||||| | || || |||| |||| | || || ||||
Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657595895086480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |