Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq32638 129 6e-25 >seq32638 Length=16397 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || |||||||| ||||| || | || ||||| || |||| ||| | Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||||| |||||||| || |||||||| ||||| || ||||| ||||| | Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 13586 CTACTACACGTTCTCC 13601 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| || |||||||| | || ||||||||||| ||||||| Sbjct 15599 TCTCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGT 15658 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||| || ||||| || ||||| || |||| |||||| | ||||||||| Sbjct 15659 TTTCCATGGCAATCTGGAAGCCATAGAAACATCGAGCTTCTGTGATTTGTACTTC 15713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479307506414800