Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq32638 138 2e-27 seq22336 129 8e-25 seq7389 102 1e-16 seq25550 93.3 6e-14 >seq32638 Length=16397 Score = 138 bits (152), Expect = 2e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | |||||| ||||| ||||| || ||||||| ||| | || | Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| | Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585 Query 42207 C 42207 | Sbjct 13586 C 13586 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 12166 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 12225 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 12226 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 12260 >seq22336 Length=52721 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| |||| ||||||| Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 42320 CAACCACTCTCTCACC 42335 >seq7389 Length=11090 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||||||||||||||| || | || || ||||||| || ||| Sbjct 3143 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3202 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 3203 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 3261 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 3262 CTCCAGGTAGATGGC 3276 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| |||||||| || || ||||| || ||||| |||||||||| |||||| Sbjct 5676 GTGCCAGCATTGAATAAGGTGGGGGAGGCGTGTGTGAACCACCTTTCAGACAGCAGATTG 5735 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 |||||||| || || | || || || || || || || |||| || | ||| ||| Sbjct 5736 TACGTCTCGATCGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 5795 Query 72538 ATATGCTGAGG 72548 || |||||||| Sbjct 5796 ATGTGCTGAGG 5806 >seq25550 Length=27429 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| |||| | || || || ||||| || | Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || ||||||||||| ||||| |||||||| ||||| || | || || | Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | || ||||| | || || |||| |||| | || || |||| Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670550929712720