Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19977 104 3e-17 >seq19977 Length=118669 Score = 104 bits (114), Expect = 3e-17 Identities = 194/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 70296 ATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 |||| |||| || ||| | ||||||||| || || ||||| || || || || | Sbjct 57421 ATGGTGAATTATCTTGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTTGGAGTGCCTT 57480 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | || ||||| |||||||| || | || | |||||||| || | || || || |||| Sbjct 57481 TCAATATTGCCAGCTATTCACTGCTCACCTATATGATTGCCCATGTCACAGGGCT-AAAG 57539 Query 70416 C--GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | | | |||||| ||||||| |||| || |||||| | || | ||||| | || || Sbjct 57540 CCTGGA-GAGTTCATACACACATTTGGAGATGCTCACATATACCTGAATCATCTAGAACC 57598 Query 70474 ATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAA 70533 |||| || ||||| | | ||||| |||||||||||||| || || | |||| Sbjct 57599 TCTAAAAGTTCAACTTCAGAGAGAGCCAAGACCTTTTCCCAAACTCAGAATTCTTTGTAA 57658 Query 70534 AGTTGAAAATAT---TGACAGTTTTAAGTACGAAGATTTT 70570 |||||| | || |||| |||||| ||||| ||| Sbjct 57659 GGTTGAAGACATCAGTGAC---TTTAAGGCAGAAGACTTT 57695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740409643084720