Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq22336 107 2e-18
seq32638 102 7e-17
>seq22336
Length=52721
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || || || ||||| || ||||| || || | || ||
Sbjct 42202 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCTTC 42261
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||||||||||||||| ||||||||||| || || |||||||||| ||||| ||
Sbjct 42262 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGGCA 42321
Query 13295 ATCAACCTTTCACC 13308
| || || |||||
Sbjct 42322 ACCACTCTCTCACC 42335
>seq32638
Length=16397
Score = 102 bits (112), Expect = 7e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
||||||||||| || || ||||| ||||| || || || ||||| | |||| ||| ||
Sbjct 13468 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCTTC 13527
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||||||||| | ||||| || || ||||| || |||||||| ||||| ||||| |||
Sbjct 13528 AGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAGCT 13587
Query 13295 A 13295
|
Sbjct 13588 A 13588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430614077323044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |