Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq30429 168 2e-36
seq22336 116 9e-21
seq32638 107 4e-18
seq46386 84.2 5e-11
>seq30429
Length=25259
Score = 168 bits (186), Expect = 2e-36
Identities = 135/163 (83%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 11376 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 11435
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 11436 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 11495
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 11496 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 11538
>seq22336
Length=52721
Score = 116 bits (128), Expect = 9e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| | || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 42323 GTTGCCTTTGCTTCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 42264
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||| |||||||||| || ||| |||| ||||| ||
Sbjct 42263 CTGAAGAAGAGGGGCCTGATGCCTGGACTAACTTTCTCCAATGAACTGATTAGCAGAGAT 42204
Query 269258 GA 269259
||
Sbjct 42203 GA 42202
>seq32638
Length=16397
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct 13601 GGAGAACGTGTAGTAGCTTTTGCGGCAGTGGAAGGAATCTTCTTTTCTGGCTCATTTGCA 13542
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| |||||||||||||| | ||||| || | ||||| ||||||||| |
Sbjct 13541 TCAATATTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGGCTCACTTTTTCTAACGAACTC 13482
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 13481 ATCAGTAGAGATGA 13468
>seq46386
Length=15654
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| |||||||| |||||||| || || | || |||||||| || || ||||||||||
Sbjct 15140 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 15199
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | ||| ||||||||||| || |||
Sbjct 15200 TCAGTCGCTGCTGATCAGGAGGAATGCCT 15228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150363939780376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |