Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq30429 168 2e-36 seq22336 116 9e-21 seq32638 107 4e-18 seq46386 84.2 5e-11 >seq30429 Length=25259 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 11376 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 11435 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 11436 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 11495 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 11496 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 11538 >seq22336 Length=52721 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| | || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 42323 GTTGCCTTTGCTTCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 42264 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| |||||||||| || ||| |||| ||||| || Sbjct 42263 CTGAAGAAGAGGGGCCTGATGCCTGGACTAACTTTCTCCAATGAACTGATTAGCAGAGAT 42204 Query 269258 GA 269259 || Sbjct 42203 GA 42202 >seq32638 Length=16397 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || || ||||| Sbjct 13601 GGAGAACGTGTAGTAGCTTTTGCGGCAGTGGAAGGAATCTTCTTTTCTGGCTCATTTGCA 13542 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| |||||||||||||| | ||||| || | ||||| ||||||||| | Sbjct 13541 TCAATATTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGGCTCACTTTTTCTAACGAACTC 13482 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 13481 ATCAGTAGAGATGA 13468 >seq46386 Length=15654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || |||||||| || || |||||||||| Sbjct 15140 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 15199 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 15200 TCAGTCGCTGCTGATCAGGAGGAATGCCT 15228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150363939780376