Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq12754 183 4e-41 seq49267 125 1e-23 >seq12754 Length=56440 Score = 183 bits (202), Expect = 4e-41 Identities = 226/308 (73%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 5334 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5275 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 5274 TATTGATAATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5215 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || ||||| || || ||||| || || | ||| | ||| Sbjct 5214 AGCAGATGGCGTTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATGG 5155 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | |||||||||||||| || || |||||||| || | || || | ||||| ||||| Sbjct 5154 TTTCACCGAAGATGGCACCTGGCCGTGGCTTTTCTACGAGGAGGCCTGGGTACAGCTCCA 5095 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| ||||||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5094 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5035 Query 8978 TTATTAAT 8985 ||||| || Sbjct 5034 TTATTGAT 5027 Score = 114 bits (126), Expect = 2e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || || || || || ||| |||||||| || ||||||| Sbjct 3306 ATGAGTCTGGTAGTTTGGAAGAGCTGCTCATCGTCCCACTCTGGATGCTCCTGTTTCAGG 3247 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 3246 ATGTCACAGACGCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCCGGG 3187 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 3186 ACCAAACCAAACACCTCCTGCCCCACAGAGAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3127 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 3126 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 3067 Query 9862 T 9862 | Sbjct 3066 T 3066 >seq49267 Length=19024 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || | ||||||||||||| |||||||||||||| | |||| Sbjct 13268 TCTTAACTATCTCAAAACCAGCTGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 13327 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || ||||| |||||||||||||| || | ||| | || | Sbjct 13328 AGCAGATGGGGTTTCCAAGAAGCCCTTTCAGGGAAAACGGAGCTCCGATCTCCACCATAC 13387 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 13388 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 13447 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 13448 GAGCATCAATGTCTCCATACAG 13469 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || ||||| ||||||||| | || |||||| | | || || ||| || ||| | | Sbjct 16436 CTCACCCCGTGTCCCAGTGCCTTGGTGAAGCCACGTCCCATCTTCCCAGAT--GTCTTGA 16493 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| |||||||| ||| |||| ||||||||||| | ||||||||| | |||| Sbjct 16494 AGAACTGGTGGGTGAAATGCTGGGCAAAGAAGGCAAACATCAGGTTGGTGCCTCGAGGAT 16553 Query 10147 CGG 10149 ||| Sbjct 16554 CGG 16556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707903760299680