Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq37685 107 2e-18 >seq37685 Length=54521 Score = 107 bits (118), Expect = 2e-18 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 94743 ATTACTTTATCGCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCA 94802 ||||||||| | || |||| | || | | || || ||||||| |||| || | Sbjct 54141 ATTACTTTAGTGGAAAATATTTTCCATAAATCTGCATGCCACCTCTCAGGCGCAGGACAA 54200 Query 94803 AGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCT 94862 || | || |||||||| | | ||| |||||| || || ||| ||||||| Sbjct 54201 GATGGAGGGTGGATTCCTTCTAGATGTTGTAATCGGACAAGGTACAACCATCTTCCAGCT 54260 Query 94863 GTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 | || || ||||||| | || |||||||| || ||||| ||||| ||||| | || | Sbjct 54261 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 54320 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | ||||| || | | |||||| | | || || |||| |||||||| || |||| Sbjct 54321 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAG 54380 Query 94983 TAAGAGTTTTCACAAAGATCTGCA 95006 | || || |||||||||||||||| Sbjct 54381 TCAGGGTCTTCACAAAGATCTGCA 54404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447898261555920