Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq32638 129 7e-25
seq22336 129 7e-25
seq7389 100 4e-16
seq25550 87.8 2e-12
>seq32638
Length=16397
Score = 129 bits (142), Expect = 7e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||||||| || |||||||| ||||| ||||| || ||||||| ||| | || |
Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| || || ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585
Query 33446 C 33446
|
Sbjct 13586 C 13586
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 12166 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 12225
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||| ||||| |||||
Sbjct 12226 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 12260
>seq22336
Length=52721
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | ||| || || || ||||||||||| ||||| |||| ||||||||
Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319
Query 33446 CAATAAGTCTCTCTCC 33461
||| | |||||| ||
Sbjct 42320 CAACCACTCTCTCACC 42335
>seq7389
Length=11090
Score = 100 bits (110), Expect = 4e-16
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275
||||| ||||| |||||||||||||||||||| || | || || ||||||| || ||
Sbjct 3143 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3202
Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
|| || || || || ||||| |||||| || || ||| | | || || ||||||||||
Sbjct 3203 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 3261
Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361
|||| ||| ||||| | | | |||||
Sbjct 3262 CTCCAGGTAGATGGCAAAAGCCCCAGG 3288
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || ||||| |||||||| || || ||||| || ||||| ||||||| || ||||||
Sbjct 5676 GTGCCAGCATTGAATAAGGTGGGGGAGGCGTGTGTGAACCACCTTTCAGACAGCAGATTG 5735
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
|||||||| || || | || || || || || || || || | || | ||| |||
Sbjct 5736 TACGTCTCGATCGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 5795
Query 63732 ATGTGCTGAGG 63742
|||||||||||
Sbjct 5796 ATGTGCTGAGG 5806
>seq25550
Length=27429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | ||| || || ||||||||||| ||||| |||||||| ||||| || | || || |
Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| || | || ||||| | || || |||| |||| | || || ||||
Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622401171205520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |