Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq32638 129 7e-25 seq22336 114 2e-20 seq7389 100 4e-16 seq25550 84.2 3e-11 >seq32638 Length=16397 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | |||||| ||||| ||||| || ||||||| ||| | || | Sbjct 13466 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 13525 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||| | Sbjct 13526 TCAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCCGCAAAAG 13585 Query 32803 C 32803 | Sbjct 13586 C 13586 >seq22336 Length=52721 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 42200 CCTCATCTCTGCTAATCAGTTCATTGGAGAAAGTTAGTCCAGGCATCAGGCCCCTCTTCT 42259 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| |||| ||||||| Sbjct 42260 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGAAGCAAAGG 42319 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 42320 CAACCACTCTCTCACC 42335 >seq7389 Length=11090 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| |||||||||||||||||||| || | || || ||||||| || || Sbjct 3143 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3202 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 3203 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 3261 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 3262 CTCCAGGTAGATGGCAAAAGCCCCAGG 3288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| ||||| || ||||| || || || || || | Sbjct 9124 CACTGAATACTTTCTTGGTTTCTTTGTGCAGATTGGACACGGCGATCCTCGCTGCCAGGA 9183 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||| || || || |||| || || ||||| || |||| || ||||| || |||| Sbjct 9184 TGGCGTAGTCAGGGTGTTTGGTGGTCAGGGTGGCGGCCGTTTCAGCAGCCAGCGTATCCA 9243 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || || | || | || || || |||||||| Sbjct 9244 GTTCCACTGTCGTGACTCCGCTGTACAGCCCCTGAATCACCTTCAT 9289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| |||||||| || || ||||| || ||||| ||||||| || |||||| Sbjct 5676 GTGCCAGCATTGAATAAGGTGGGGGAGGCGTGTGTGAACCACCTTTCAGACAGCAGATTG 5735 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 |||||||| || || | || || || || || || || || | || | ||| ||| Sbjct 5736 TACGTCTCGATCGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 5795 Query 63587 ATGTGCTGAGG 63597 ||||||||||| Sbjct 5796 ATGTGCTGAGG 5806 >seq25550 Length=27429 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 25243 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 25302 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || || ||||||||||| ||||| |||||||| ||||| || | | || | Sbjct 25303 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 25362 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | || ||||| | || || |||| |||| | || || |||| Sbjct 25363 TCTGGGAGATCTCCCACACTGTCTTGTAAAGCTGCTTCAAGTCATCAGGAA 25413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633076605711200