Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23382 87.8 3e-12 seq22336 87.8 3e-12 seq7389 86.0 1e-11 >seq23382 Length=2546 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||| ||| || ||||||||| Sbjct 2290 ACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 2231 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | |||||||| ||||| || || ||||| |||||||| || | || || Sbjct 2230 GACTCGTTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGG 2171 Query 244217 CTGTTCCTCACGCCGT 244232 ||||| || ||||||| Sbjct 2170 CTGTTTCTGACGCCGT 2155 >seq22336 Length=52721 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | | || || ||||||||||| ||||| |||| || Sbjct 42335 GGTGAGAGAGTGGTTGCCTTTGCTTCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 42276 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 42275 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTAACTTTCTCCAATGAACTG 42216 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 42215 ATTAGCAGAGATGAGG 42200 >seq7389 Length=11090 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | |||| |||| || || || || || || || ||||| |||||||| Sbjct 1589 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 1648 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 |||| || ||| |||||| ||| |||||| | ||| |||||||||||| ||||| Sbjct 1649 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTAGAGCATGTAGGGCGTG 1708 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 || ||||| ||||| ||| || || |||||| | | ||||| ||| ||| Sbjct 1709 CCAGTCTCTGTCTGGGATTCGATGATAGCGTACCAGAGCTGCTGGGCCTTCACCACTCTG 1768 Query 244886 CG 244887 || Sbjct 1769 CG 1770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| ||||| ||| ||||| |||| | |||||| || Sbjct 3148 CTTCATGAAGAGATCAGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 3207 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| Sbjct 3208 TTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAG 3267 Query 245128 GTAGA 245132 ||||| Sbjct 3268 GTAGA 3272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943511463082720