Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq19977 131 1e-25
seq15741 91.5 1e-13
>seq19977
Length=118669
Score = 131 bits (144), Expect = 1e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 20170 TAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCC 20229
||| || |||| ||| | ||| ||||| |||||||| || ||||| || ||||| ||
Sbjct 57602 TAGAGGTTCTAGATGATTCAGGTATATGTGAGCATCTCCAAATGTGTGTATGAACTCTCC 57543
Query 20230 GGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTT 20289
|| | || || || ||||| |||| |||||| || | || |||||||||||||| ||
Sbjct 57542 AGGCTTTAGCCCTGTGACATGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATT 57483
Query 20290 AAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349
||||| ||||| | ||||| ||||| ||||||||||| ||||| || || | |||||
Sbjct 57482 GAAAGGCACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACC 57423
>seq15741
Length=12914
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || || || |||| |||||| || | || |||||||||||||| || |||||
Sbjct 7497 AGCCCTGTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 7556
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349
||||| | ||||| ||||| ||||||||||| ||||| || || | |||||
Sbjct 7557 ACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACC 7609
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/122 (76%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT-G 20590
|||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| ||| |
Sbjct 10748 CCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGG 10807
Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACT 20650
||| | || || |||||||||| | || ||||| ||||| ||||| ||
Sbjct 10808 TGC-TGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACA 10866
Query 20651 CC 20652
||
Sbjct 10867 CC 10868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440985925706480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |