Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq19977 131 1e-25 seq15741 91.5 1e-13 >seq19977 Length=118669 Score = 131 bits (144), Expect = 1e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20170 TAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCC 20229 ||| || |||| ||| | ||| ||||| |||||||| || ||||| || ||||| || Sbjct 57602 TAGAGGTTCTAGATGATTCAGGTATATGTGAGCATCTCCAAATGTGTGTATGAACTCTCC 57543 Query 20230 GGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTT 20289 || | || || || ||||| |||| |||||| || | || |||||||||||||| || Sbjct 57542 AGGCTTTAGCCCTGTGACATGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATT 57483 Query 20290 AAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 ||||| ||||| | ||||| ||||| ||||||||||| ||||| || || | ||||| Sbjct 57482 GAAAGGCACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACC 57423 >seq15741 Length=12914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || |||| |||||| || | || |||||||||||||| || ||||| Sbjct 7497 AGCCCTGTGACGTGGGCAATCATATAGGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 7556 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 ||||| | ||||| ||||| ||||||||||| ||||| || || | ||||| Sbjct 7557 ACTCCAAGTCCCATATCTCCAGACCTCTGATAGAGCTGGCAAGATAATTCACC 7609 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT-G 20590 |||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| ||| | Sbjct 10748 CCGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGG 10807 Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACT 20650 ||| | || || |||||||||| | || ||||| ||||| ||||| || Sbjct 10808 TGC-TGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACA 10866 Query 20651 CC 20652 || Sbjct 10867 CC 10868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440985925706480