Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06-
10] 70,122 sequences; 1,119,683,066 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq12754 174 2e-38
seq49267 134 2e-26
>seq12754
Length=56440
Score = 174 bits (192), Expect = 2e-38
Identities = 216/296 (73%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||||||| || ||||| ||| | || || |
Sbjct 5334 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5275
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || ||||||||||| || ||||||||| | ||||
Sbjct 5274 TATTGATAATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5215
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| |||| || ||||||| || ||||| || || | ||| | |||
Sbjct 5214 AGCAGATGGCGTTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATGG 5155
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||||||||||||||| || || || ||||| |||| || ||| | ||| || || |
Sbjct 5154 TTTCACCGAAGATGGCACCTGGCCGTGGCTTTTCTACGAGGAGGCCTGGGTACAGCTCCA 5095
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| |||| ||| ||||| || |||||| || || || || || || || |||
Sbjct 5094 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5039
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| ||||| || | |||||| || |||| || || || || ||||| || | || |||
Sbjct 3297 GTAGTTTGGAAGAGCTGCTCATCGTCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAG 3238
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|| | ||||||||| ||||||||||| || || |||||||| || ||||| || ||||||
Sbjct 3237 ACGCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCCGGGACCAAACCA 3178
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
||||| || | |||||| | || ||| | || || | | || | || | |||
Sbjct 3177 AACACCTCCTGCCCCACAGAGAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAGATCATC 3118
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
| |||| || || || || || || ||||||||||| || |||||
Sbjct 3117 TCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAAT 3071
Score = 102 bits (112), Expect = 1e-16
Identities = 172/247 (70%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 9478 CCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCG 9537
||||||| | | |||||| |||||||| | ||| || | | || |||| | ||||
Sbjct 4532 CCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCG 4473
Query 9538 CCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCC 9597
||| | || ||||||| || | |||||| |||| ||||||||||| |||||
Sbjct 4472 TGTATCTGGAACGTGTCAGGCAGAAGCGGGTGCCAGTGGTACAGGGTATTGAATTCGGCT 4413
Query 9598 GCTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTA 9655
|| |||||||||||||| ||||| ||| |||||| | ||| ||||| || | |
Sbjct 4412 GCAATTCGGTTCTGGTATTGAAATCTCTGGT--TGAACAGCAGCTCGGGGTCGAACTTGA 4355
Query 9656 GCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTT 9715
| | ||||||||| || || | || || ||||| | ||| | ||| || || || |
Sbjct 4354 GTTTGAAGTGGTAGCCACTCAAGTGTTGCACATAGTCCTCGATAACAATCTTGATCGTCT 4295
Query 9716 CCCCGGT 9722
| || ||
Sbjct 4294 CTCCTGT 4288
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| |||| ||||| ||||| | ||||||| ||||| || || ||| |
Sbjct 577 CTTACGCGTCGTACAGTTTTCCCCATAATATCCCGTCCTTGTACAGTCACATTCATACTG 518
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
|||||| || ||||||||||| |||| ||||| ||||| | || |||||||||||
Sbjct 517 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACACGGATTTGAGCAGCAAGGGTT 458
Query 10960 GGCTGCAAT 10968
||||| |||
Sbjct 457 GGCTGGAAT 449
>seq49267
Length=19024
Score = 134 bits (148), Expect = 2e-26
Identities = 196/277 (71%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961
|||||||||| || | ||| || || | ||| || || || || || ||||| |
Sbjct 13230 CTTCACATTGAGGCACACGAGCTTCTCAAGTGATGCTGTCTTAACTATCTCAAAACCAGC 13289
Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021
| ||||||||||| ||||||||||||||| | |||||||||||| ||| | | ||
Sbjct 13290 TGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 13349
Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081
|||||||| |||||||||||| || | ||| | || || || || || || || |||
Sbjct 13350 CCCTTTCAGGGAAAACGGAGCTCCGATCTCCACCATACTTTCTCCAAAAATACCATTGGG 13409
Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
| ||||| || | | ||||| | || | || | ||| || | ||| ||||| ||
Sbjct 13410 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 13469
Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||||| |||||| || |||| | ||| ||| ||
Sbjct 13470 CTCTTCCAGCTCGGCTGCCTTCTCTTCCTCTCCTGCA 13506
Score = 86.0 bits (94), Expect = 9e-12
Identities = 161/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544
||||| ||||| ||||||| || || || ||||| | |||| | | ||| |||
Sbjct 14921 ATGAGCATGGAGGTGTTGTAGACAAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 14978
Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604
|| || |||| ||| ||||||| | ||||| |||||||| |||| || |
Sbjct 14979 TGAAGGAGTCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGC 15038
Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664
| ||| |||||| || | || || ||||| | ||| ||||| || | || || |
Sbjct 15039 GATTCCTGTACTGGAACGGTGTCCCAAACAGCAGCTCAGGGTCGAACTTGAGGCTGAGGA 15098
Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
|||||||||||| |||||||| || | || | ||| |||||||| |||||
Sbjct 15099 AGTACCCGCTGAGATGCTGGACGTAGTCCTCAATGACAATCTTAATGGTCTCCCC 15153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723093634314800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |