Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Antrostomus_20carolinensis_20[refseq_20GCF_5F000700745.1_202014-06- 10] 70,122 sequences; 1,119,683,066 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq12754 174 2e-38 seq49267 134 2e-26 >seq12754 Length=56440 Score = 174 bits (192), Expect = 2e-38 Identities = 216/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 5334 GGAAGGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5275 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 5274 TATTGATAATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5215 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| || ||||||| || ||||| || || | ||| | ||| Sbjct 5214 AGCAGATGGCGTTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATGG 5155 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| |||| || ||| | ||| || || | Sbjct 5154 TTTCACCGAAGATGGCACCTGGCCGTGGCTTTTCTACGAGGAGGCCTGGGTACAGCTCCA 5095 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| |||| ||| ||||| || |||||| || || || || || || || ||| Sbjct 5094 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5039 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | |||||| || |||| || || || || ||||| || | || ||| Sbjct 3297 GTAGTTTGGAAGAGCTGCTCATCGTCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAG 3238 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||||||||| ||||||||||| || || |||||||| || ||||| || |||||| Sbjct 3237 ACGCGGTTGTGTTCCCTCAGCCATATCGTAGCATACATCATCAAGCCCGGGACCAAACCA 3178 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | |||||| | || ||| | || || | | || | || | ||| Sbjct 3177 AACACCTCCTGCCCCACAGAGAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAGATCATC 3118 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | |||| || || || || || || ||||||||||| || ||||| Sbjct 3117 TCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAAT 3071 Score = 102 bits (112), Expect = 1e-16 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 9478 CCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCG 9537 ||||||| | | |||||| |||||||| | ||| || | | || |||| | |||| Sbjct 4532 CCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCG 4473 Query 9538 CCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCC 9597 ||| | || ||||||| || | |||||| |||| ||||||||||| ||||| Sbjct 4472 TGTATCTGGAACGTGTCAGGCAGAAGCGGGTGCCAGTGGTACAGGGTATTGAATTCGGCT 4413 Query 9598 GCTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTA 9655 || |||||||||||||| ||||| ||| |||||| | ||| ||||| || | | Sbjct 4412 GCAATTCGGTTCTGGTATTGAAATCTCTGGT--TGAACAGCAGCTCGGGGTCGAACTTGA 4355 Query 9656 GCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTT 9715 | | ||||||||| || || | || || ||||| | ||| | ||| || || || | Sbjct 4354 GTTTGAAGTGGTAGCCACTCAAGTGTTGCACATAGTCCTCGATAACAATCTTGATCGTCT 4295 Query 9716 CCCCGGT 9722 | || || Sbjct 4294 CTCCTGT 4288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| ||||| | ||||||| ||||| || || ||| | Sbjct 577 CTTACGCGTCGTACAGTTTTCCCCATAATATCCCGTCCTTGTACAGTCACATTCATACTG 518 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| ||||| | || ||||||||||| Sbjct 517 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACACGGATTTGAGCAGCAAGGGTT 458 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 457 GGCTGGAAT 449 >seq49267 Length=19024 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || || | ||| || || || || || ||||| | Sbjct 13230 CTTCACATTGAGGCACACGAGCTTCTCAAGTGATGCTGTCTTAACTATCTCAAAACCAGC 13289 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | ||||||||||| ||||||||||||||| | |||||||||||| ||| | | || Sbjct 13290 TGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 13349 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 |||||||| |||||||||||| || | ||| | || || || || || || || ||| Sbjct 13350 CCCTTTCAGGGAAAACGGAGCTCCGATCTCCACCATACTTTCTCCAAAAATACCATTGGG 13409 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| | || | || | ||| || | ||| ||||| || Sbjct 13410 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 13469 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| |||||| || |||| | ||| ||| || Sbjct 13470 CTCTTCCAGCTCGGCTGCCTTCTCTTCCTCTCCTGCA 13506 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| || || || ||||| | |||| | | ||| ||| Sbjct 14921 ATGAGCATGGAGGTGTTGTAGACAAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 14978 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| ||||||| | ||||| |||||||| |||| || | Sbjct 14979 TGAAGGAGTCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGC 15038 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| |||||| || | || || ||||| | ||| ||||| || | || || | Sbjct 15039 GATTCCTGTACTGGAACGGTGTCCCAAACAGCAGCTCAGGGTCGAACTTGAGGCTGAGGA 15098 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| |||||||| || | || | ||| |||||||| ||||| Sbjct 15099 AGTACCCGCTGAGATGCTGGACGTAGTCCTCAATGACAATCTTAATGGTCTCCCC 15153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723093634314800